Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.22□□□□□ -2.37
SHANK3Q9BYB0 RNU6-830P-201ENST00000516353 107 ntBASIC0.22□□□□□ -2.37
SHANK3Q9BYB0 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.22□□□□□ -2.37
SHANK3Q9BYB0 MIR6516-201ENST00000630554 81 ntBASIC0.22□□□□□ -2.37
SHANK3Q9BYB0 Y_RNA.101-201ENST00000363154 102 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.341-201ENST00000365341 102 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.436-201ENST00000384097 102 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.446-201ENST00000384178 104 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 U8.17-201ENST00000391292 132 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNA5SP222-201ENST00000411039 105 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNU6-1199P-201ENST00000411249 104 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNU6-977P-201ENST00000516411 103 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR4300-201ENST00000581016 96 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR4264-201ENST00000583520 66 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 AC005176.2-201ENST00000596933 147 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 AP000753.3-201ENST00000604083 169 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNU6-934P-201ENST00000365154 107 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 SNORA36.2-201ENST00000384004 127 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNU6-177P-201ENST00000411257 104 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RPL7P42-201ENST00000481005 679 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNA5SP134-201ENST00000516492 96 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR2115-201ENST00000516657 100 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR5690-201ENST00000583739 73 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR1244-1-201ENST00000612829 85 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 uc_338.4-201ENST00000616635 176 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR1244-3-201ENST00000635744 85 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR1244-2-201ENST00000636449 85 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 MIR1244-4-202ENST00000636813 85 ntBASIC0.21□□□□□ -2.38
SHANK3Q9BYB0 RNU6-945P-201ENST00000383947 107 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.473-201ENST00000384333 102 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 SNX3P1X-201ENST00000414887 175 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 AL390729.2-201ENST00000416137 156 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 AC024067.1-201ENST00000426199 223 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 AC002350.1-201ENST00000490759 375 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 AC011352.1-201ENST00000512300 793 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 RNU6-863P-201ENST00000515989 104 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 RNU7-30P-201ENST00000516835 62 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 AP003357.1-201ENST00000604497 148 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 AC025253.1-201ENST00000613623 543 ntBASIC0.2□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.27-201ENST00000362540 103 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 SNORD118-201ENST00000363593 134 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 SNORD78.2-201ENST00000391076 69 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 AC005042.3-201ENST00000453230 174 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.757-201ENST00000578934 114 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 AC087685.1-201ENST00000587507 141 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 AC060780.3-201ENST00000589464 80 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 AC006441.5-201ENST00000612680 209 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 AC090517.2-201ENST00000614966 680 ntBASIC0.19□□□□□ -2.38
SHANK3Q9BYB0 RNU6-125P-201ENST00000384505 107 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR1277-201ENST00000408536 78 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 RNU6-847P-201ENST00000411115 108 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 RNU6-470P-201ENST00000515954 104 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR4768-201ENST00000585270 74 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 AC080013.6-201ENST00000606185 215 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR3688-2-201ENST00000636963 87 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 RNU6-845P-201ENST00000362578 103 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.172-201ENST00000363765 102 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 SNORD14E-201ENST00000364009 85 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.310-201ENST00000365063 113 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 RNU6-20P-201ENST00000384106 107 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.450-201ENST00000384198 113 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR520F-201ENST00000384824 87 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR573-201ENST00000384964 99 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR140-201ENST00000385282 100 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR548F5-201ENST00000408421 86 ntBASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.18□□□□□ -2.38
SHANK3Q9BYB0 MIR377-201ENST00000362145 69 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU6-654P-201ENST00000364373 107 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU6-767P-201ENST00000384132 107 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU6-1215P-201ENST00000384441 102 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU6-1248P-201ENST00000391096 64 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU7-56P-201ENST00000458744 62 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 snoU13.16-201ENST00000459350 104 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU7-115P-201ENST00000516433 55 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 MIR4804-201ENST00000581683 73 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 LARP7P1-201ENST00000605576 316 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
SHANK3Q9BYB0 RNU6-1188P-201ENST00000363795 107 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RNU6-674P-201ENST00000363831 107 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.329-201ENST00000365209 107 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 MTCO2P33-201ENST00000402100 465 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 SNRPGP14-201ENST00000435400 219 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 AC023449.1-201ENST00000454464 154 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RPL23AP54-201ENST00000495129 419 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 SNORA25.12-201ENST00000516202 82 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RNU6-155P-201ENST00000516347 100 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RNU6-358P-201ENST00000516564 75 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RNU6-94P-201ENST00000607728 107 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 MIR411-201ENST00000362239 96 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 MIR18A-201ENST00000362310 71 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RNU4-75P-201ENST00000364621 146 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.462-201ENST00000384268 102 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 MIR520H-201ENST00000385126 88 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 238.9 ms