Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.253-201ENST00000364562 112 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 Y_RNA.265-201ENST00000364677 108 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 Y_RNA.489-201ENST00000384410 101 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RNU6-950P-201ENST00000384651 107 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RNU6-1031P-201ENST00000384773 107 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 MIR1323-201ENST00000408090 73 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 MIR1267-201ENST00000408723 78 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 MIR1278-201ENST00000408753 81 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RN7SKP200-201ENST00000410564 320 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 COX6CP10-201ENST00000416832 224 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RNU1-123P-201ENST00000458950 160 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RNU6-437P-201ENST00000459408 95 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 AL049830.1-201ENST00000468034 425 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.31□□□□□ -2.2
HOXD4P09016 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.31□□□□□ -2.2
HOXD4P09016 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 AL442067.1-201ENST00000613261 223 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 AL591926.4-201ENST00000616895 298 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 AL353770.2-201ENST00000620024 78 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
HOXD4P09016 Y_RNA.203-201ENST00000364106 102 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 Y_RNA.292-201ENST00000364904 97 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 Y_RNA.293-201ENST00000364908 93 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 RNU6-383P-201ENST00000410864 94 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.3□□□□□ -2.2
HOXD4P09016 AL354695.1-201ENST00000427935 228 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 Z98949.2-201ENST00000440996 144 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 JTBP1-201ENST00000441314 247 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 RPS29P23-201ENST00000458635 123 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 OR9P1P-201ENST00000496431 281 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.3□□□□□ -2.2
HOXD4P09016 AC100767.1-201ENST00000528178 123 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 SNORA4-201ENST00000584302 138 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 AC021506.2-201ENST00000612354 169 ntBASIC1.3□□□□□ -2.2
HOXD4P09016 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.29□□□□□ -2.2
HOXD4P09016 RNU6-674P-201ENST00000363831 107 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 Y_RNA.191-201ENST00000363972 113 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 Y_RNA.304-201ENST00000365011 112 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 RNU6-144P-201ENST00000383951 107 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 RNU6-203P-201ENST00000384038 104 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 Y_RNA.476-201ENST00000384347 108 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 Y_RNA.572-201ENST00000384757 98 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 RNU1-78P-201ENST00000391248 165 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 RNA5SP482-201ENST00000391269 118 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AL034345.1-201ENST00000407768 123 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXD4P09016 SNRPGP13-201ENST00000442212 177 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AC005908.1-201ENST00000468701 347 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.29□□□□□ -2.2
HOXD4P09016 RNU7-28P-201ENST00000516759 62 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 RNU6-388P-201ENST00000517012 105 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 RNU6-389P-201ENST00000517048 105 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 SNORA28-201ENST00000606769 126 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AC078938.1-201ENST00000620993 318 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AL365265.1-201ENST00000621045 234 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 AC095038.3-201ENST00000634439 195 ntBASIC1.29□□□□□ -2.2
HOXD4P09016 MIR367-201ENST00000362299 68 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 SNORD68-201ENST00000363214 84 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 RNU6-1209P-201ENST00000363655 107 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 RNY4P28-201ENST00000365281 93 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 CALM2P4-201ENST00000430810 426 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 RNU4-71P-201ENST00000516258 113 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 SNORA77B-201ENST00000578179 125 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 MIR4452-201ENST00000583004 71 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 Y_RNA.802-201ENST00000614892 130 ntBASIC1.28□□□□□ -2.2
HOXD4P09016 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HOXD4P09016 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HOXD4P09016 MIRLET7C-201ENST00000362160 84 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNU6-653P-201ENST00000363074 106 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNY1-201ENST00000364228 113 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 SNORA8.3-201ENST00000384679 139 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 MIR526A2-201ENST00000390198 65 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 SNRPGP10-201ENST00000432323 225 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNY3P16-201ENST00000516338 101 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNA5SP61-201ENST00000516453 100 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 RNA5SP102-201ENST00000516865 106 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.27□□□□□ -2.21
HOXD4P09016 MIR4724-201ENST00000579485 89 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 AC009779.6-201ENST00000603972 165 ntBASIC1.27□□□□□ -2.21
HOXD4P09016 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
HOXD4P09016 Y_RNA.24-201ENST00000362508 103 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 U8.5-201ENST00000364528 136 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 RNU6-969P-201ENST00000383900 105 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 RNU6-424P-201ENST00000384367 105 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 MIR522-201ENST00000385071 87 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 U8.16-201ENST00000391279 133 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 Y_RNA.626-201ENST00000411288 95 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 AL161935.2-201ENST00000414627 60 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 MLLT10P1-201ENST00000418346 262 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 NDUFA4P2-201ENST00000489989 244 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 RNU6-1116P-201ENST00000517269 99 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.26□□□□□ -2.21
HOXD4P09016 RPL23AP91-201ENST00000569211 455 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 AC130289.1-201ENST00000577321 73 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 MIR4762-201ENST00000585261 75 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 AL021707.8-201ENST00000609428 183 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 MIR6078-201ENST00000611069 100 ntBASIC1.26□□□□□ -2.21
HOXD4P09016 JPX_2.1-201ENST00000614161 69 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms