Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 RNU6-910P-201ENST00000390844 107 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 AC024067.1-201ENST00000426199 223 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 MTND5P22-201ENST00000458380 195 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 LINC01399-202ENST00000458450 244 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 U8.19-201ENST00000459095 133 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 RNU6-322P-201ENST00000516010 103 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 RNU6-764P-201ENST00000516396 105 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 AC113195.1-201ENST00000579952 141 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 MIR3192-201ENST00000584920 77 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 MIR4762-201ENST00000585261 75 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 AL356055.1-201ENST00000602528 446 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 AP003357.1-201ENST00000604497 148 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 AL096861.1-201ENST00000610899 123 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 MIR548AY-201ENST00000617669 107 ntBASIC0.84□□□□□ -2.27
NKX2-6A6NCS4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.16-201ENST00000362421 102 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.153-201ENST00000363615 91 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.158-201ENST00000363651 101 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 RNU6-1209P-201ENST00000363655 107 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 RNU6-770P-201ENST00000363929 105 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.222-201ENST00000364264 102 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 U8.5-201ENST00000364528 136 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.455-201ENST00000384230 98 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.541-201ENST00000384640 113 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.569-201ENST00000384749 103 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 MIR532-201ENST00000385025 91 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 RNU6-763P-201ENST00000390865 106 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 RNU6-131P-201ENST00000391144 107 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 SNORA36B-201ENST00000410438 131 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 MTCO1P5-201ENST00000433573 344 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 NDUFA4P2-201ENST00000489989 244 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 SNORA40.15-201ENST00000516884 107 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 SNORA18.7-201ENST00000516910 131 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC090142.3-201ENST00000519012 385 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC136628.3-201ENST00000521868 290 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC127455.1-201ENST00000565496 145 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AL022345.2-201ENST00000606307 135 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 AC027279.3-201ENST00000625055 122 ntBASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
NKX2-6A6NCS4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.205-201ENST00000364128 113 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.336-201ENST00000365307 109 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 SNORA63.7-201ENST00000365579 123 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 SNORA72.4-201ENST00000384174 132 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 SNORA25-201ENST00000384384 134 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.721-201ENST00000517207 102 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 RPL23AP91-201ENST00000569211 455 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 AL020996.3-201ENST00000606617 222 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 MIR6857-201ENST00000613267 93 ntBASIC0.82□□□□□ -2.28
NKX2-6A6NCS4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 SNORA25.3-201ENST00000363205 127 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 snoU2-30.1-201ENST00000365012 70 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.393-201ENST00000383936 102 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 RNU6-662P-201ENST00000384253 104 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.512-201ENST00000384518 102 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 RNU6-383P-201ENST00000410864 94 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 AC113618.1-201ENST00000416747 285 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 MTCYBP6-201ENST00000441810 138 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 RPL39P28-201ENST00000465655 155 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 RNU7-116P-201ENST00000516940 62 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 SNORA70.22-201ENST00000517160 124 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 AC005357.1-201ENST00000588399 301 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 BX284668.6-201ENST00000606899 438 ntBASIC0.81□□□□□ -2.28
NKX2-6A6NCS4 RNU4-90P-201ENST00000362773 141 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.202-201ENST00000364083 110 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 RNU1-133P-201ENST00000364867 167 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 AC117470.1-201ENST00000381974 330 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 RNY1P4-201ENST00000384595 115 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 MIR452-201ENST00000385020 85 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 SNORD72-201ENST00000390994 80 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.581-201ENST00000391017 97 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 AC245047.7-201ENST00000440265 293 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 RNU6-437P-201ENST00000459408 95 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.637-201ENST00000459424 114 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 RNU7-41P-201ENST00000515917 61 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 SNORD111.1-201ENST00000516421 86 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 SCARNA24.2-201ENST00000516968 130 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 RNA5SP404-201ENST00000517118 132 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 JPX_2.1-201ENST00000614161 69 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 AC012676.2-201ENST00000619258 186 ntBASIC0.8□□□□□ -2.28
NKX2-6A6NCS4 SNORA33.2-201ENST00000365413 134 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.380-201ENST00000365663 111 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 MIR570-201ENST00000384917 97 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 MIR136-201ENST00000385207 82 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 RNU6-1054P-201ENST00000411293 104 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 RPS26P48-201ENST00000491713 339 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 UBL5P1-201ENST00000507979 193 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 RNU6-570P-201ENST00000517051 105 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 AP003733.2-201ENST00000529409 171 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 178.4 ms