Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC104695.3-201ENST00000604052 296 ntBASIC0.99□□□□□ -2.25
ATG4BQ9Y4P1 AP003357.1-201ENST00000604497 148 ntBASIC0.99□□□□□ -2.25
ATG4BQ9Y4P1 RAC1P9-201ENST00000604990 392 ntBASIC0.99□□□□□ -2.25
ATG4BQ9Y4P1 MIR6504-201ENST00000613520 61 ntBASIC0.99□□□□□ -2.25
ATG4BQ9Y4P1 JPX_2.1-201ENST00000614161 69 ntBASIC0.99□□□□□ -2.25
ATG4BQ9Y4P1 MIR548AY-201ENST00000617669 107 ntBASIC0.99□□□□□ -2.25
ATG4BQ9Y4P1 Y_RNA.203-201ENST00000364106 102 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 SNORA63.7-201ENST00000365579 123 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 RNU6-102P-201ENST00000384485 104 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 RNU6-897P-201ENST00000517135 105 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 AC127455.1-201ENST00000565496 145 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 AL096861.1-201ENST00000610899 123 ntBASIC0.98□□□□□ -2.25
ATG4BQ9Y4P1 MIR96-201ENST00000362288 78 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 Y_RNA.138-201ENST00000363462 102 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 SNORA22B-201ENST00000383876 138 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 SNORA22-201ENST00000383907 134 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 SNORA80D-201ENST00000384488 135 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 SNORA22C-201ENST00000384614 134 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 MIR136-201ENST00000385207 82 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 MIR802-201ENST00000390235 94 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 MIR1287-201ENST00000408492 90 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 RNU2-14P-201ENST00000411053 191 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 MTCO2P12-201ENST00000427426 682 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 RNU7-141P-201ENST00000459304 62 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 SNORA18.7-201ENST00000516910 131 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 AC090142.3-201ENST00000519012 385 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 AC134026.1-201ENST00000623249 2239 ntBASIC0.97□□□□□ -2.25
ATG4BQ9Y4P1 Y_RNA.128-201ENST00000363391 112 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 SNORD114-27-201ENST00000363766 70 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.183-201ENST00000363882 113 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 SNORD14E-201ENST00000364009 85 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-1248P-201ENST00000391096 64 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 MIR1278-201ENST00000408753 81 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 HMGN2P32-201ENST00000444648 269 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 UBL5P1-201ENST00000507979 193 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 SNORA40.15-201ENST00000516884 107 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.721-201ENST00000517207 102 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 MIR3192-201ENST00000584920 77 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 AC134503.1-201ENST00000633048 54 ntBASIC0.96□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-1209P-201ENST00000363655 107 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.216-201ENST00000364205 93 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 RNU4-38P-201ENST00000364472 129 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.418-201ENST00000384029 102 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 MIR200A-201ENST00000384875 90 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 MTCO2P33-201ENST00000402100 465 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 MIR548P-201ENST00000408336 84 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 MIR1252-201ENST00000408861 65 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 SNORA36B-201ENST00000410438 131 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.604-201ENST00000410574 102 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 AC063976.4-201ENST00000421971 163 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 HSPE1P25-201ENST00000455484 251 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 AC136628.3-201ENST00000521868 290 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 AC136443.5-201ENST00000603741 370 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
ATG4BQ9Y4P1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 RNU4-90P-201ENST00000362773 141 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-801P-201ENST00000364087 105 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.363-201ENST00000365529 113 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 AC117470.1-201ENST00000381974 330 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 SNORA72.4-201ENST00000384174 132 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.527-201ENST00000384573 102 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 MIR520C-201ENST00000385005 87 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 MIR15B-201ENST00000385045 98 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 SNORD115-46-201ENST00000390982 71 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 SNORA26.5-201ENST00000391215 123 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-437P-201ENST00000459408 95 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-191P-201ENST00000516295 94 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 RNY3P15-201ENST00000516297 97 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 SNORA74.3-201ENST00000517108 154 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 MIR4661-201ENST00000582720 75 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 PRELID3BP2-201ENST00000605362 201 ntBASIC0.94□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-797P-201ENST00000363101 109 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.105-201ENST00000363182 111 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.191-201ENST00000363972 113 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.222-201ENST00000364264 102 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 RNU1-93P-201ENST00000364704 169 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.569-201ENST00000384749 103 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 POLR2J4-204ENST00000418424 324 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 AC002429.1-201ENST00000437672 148 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 MRPS35P2-201ENST00000508242 191 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 RNU6-496P-201ENST00000516145 99 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.711-201ENST00000516993 102 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 RPL23AP91-201ENST00000569211 455 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 AC005357.1-201ENST00000588399 301 ntBASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.93□□□□□ -2.26
ATG4BQ9Y4P1 AC008163.1-202ENST00000636004 2889 ntBASIC0.92□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.796-201ENST00000364268 102 ntBASIC0.92□□□□□ -2.26
ATG4BQ9Y4P1 Y_RNA.799-201ENST00000364992 102 ntBASIC0.92□□□□□ -2.26
ATG4BQ9Y4P1 SNORD114-24-201ENST00000365029 72 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms