Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SNORD116.3-201ENST00000517176 78 ntBASIC0.72□□□□□ -2.29
TM9SF3Q9HD45 MIR5188-201ENST00000583467 113 ntBASIC0.72□□□□□ -2.29
TM9SF3Q9HD45 PRELID3BP2-201ENST00000605362 201 ntBASIC0.72□□□□□ -2.29
TM9SF3Q9HD45 SNORD58B-201ENST00000607313 66 ntBASIC0.72□□□□□ -2.29
TM9SF3Q9HD45 AC104465.1-201ENST00000611365 139 ntBASIC0.72□□□□□ -2.29
TM9SF3Q9HD45 AC122108.2-201ENST00000611946 526 ntBASIC0.72□□□□□ -2.29
TM9SF3Q9HD45 Y_RNA.330-201ENST00000365230 109 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.331-201ENST00000365267 102 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.458-201ENST00000384240 102 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 AF228730.4-201ENST00000421457 183 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 RNU6-911P-201ENST00000516523 104 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 RN7SKP295-201ENST00000517264 153 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 AC023827.1-201ENST00000569247 97 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 MIR4762-201ENST00000585261 75 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 AC106800.4-201ENST00000614905 153 ntBASIC0.71□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.5-201ENST00000362334 102 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.187-201ENST00000363918 113 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 RNU6-1048P-201ENST00000364054 107 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.230-201ENST00000364348 109 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.310-201ENST00000365063 113 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.315-201ENST00000365117 102 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.341-201ENST00000365341 102 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 RNU6-1335P-201ENST00000365426 107 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 RNU6-937P-201ENST00000384325 106 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 MIR452-201ENST00000385020 85 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 MIR1278-201ENST00000408753 81 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 RNU7-152P-201ENST00000458982 64 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 AC117454.1-201ENST00000491120 168 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 AC004812.1-201ENST00000540773 146 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 AL590095.2-201ENST00000604136 117 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 AC091925.1-201ENST00000623204 462 ntBASIC0.7□□□□□ -2.3
TM9SF3Q9HD45 MIR520C-201ENST00000385005 87 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 MIR936-201ENST00000401264 98 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 MIR1185-1-201ENST00000408598 86 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 RPS26P5-201ENST00000418544 335 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 AC005042.3-201ENST00000453230 174 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 RNU7-110P-201ENST00000516891 62 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 MIR4423-201ENST00000580922 80 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 POLR3GP1-201ENST00000594073 261 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.69□□□□□ -2.3
TM9SF3Q9HD45 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 MIR103A2-201ENST00000362154 78 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 RNA5SP264-201ENST00000363115 107 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.143-201ENST00000363520 106 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.148-201ENST00000363557 117 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.286-201ENST00000364813 102 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 U8.7-201ENST00000364940 136 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 SNORA72-201ENST00000384339 132 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 MIR570-201ENST00000384917 97 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 MIR136-201ENST00000385207 82 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.579-201ENST00000390939 94 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 SNORD28B-201ENST00000390993 75 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 RNU6-131P-201ENST00000391144 107 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 RNU2-14P-201ENST00000411053 191 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 SNORA74.3-201ENST00000517108 154 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 AC024405.2-202ENST00000532731 184 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 MIR4764-201ENST00000580680 88 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 PART1_1.1-201ENST00000611761 217 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 AC007485.1-201ENST00000616755 206 ntBASIC0.68□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.368-201ENST00000365547 113 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 SNORD14.1-201ENST00000365609 90 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 AC117470.1-201ENST00000381974 330 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 RNU6-130P-201ENST00000411112 103 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 AL160004.2-201ENST00000432935 350 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 SNORD123-201ENST00000459473 70 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 FGF7P4-201ENST00000509595 295 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 AC006157.1-201ENST00000611750 366 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.804-201ENST00000615262 101 ntBASIC0.67□□□□□ -2.3
TM9SF3Q9HD45 AC134026.1-201ENST00000623249 2239 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.39-201ENST00000362620 98 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.70-201ENST00000362886 110 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 snoU2-30.1-201ENST00000365012 70 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RNY3P14-201ENST00000384309 102 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RNU6-308P-201ENST00000390957 107 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RPL23AP54-201ENST00000495129 419 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RN7SKP164-201ENST00000516138 266 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 MIR4795-201ENST00000584182 89 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AL512605.2-201ENST00000592972 256 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AL353765.1-201ENST00000605514 183 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 Y_RNA.772-201ENST00000606692 102 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AC011373.1-201ENST00000607270 237 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RNU6-94P-201ENST00000607728 107 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AC007742.2-201ENST00000618226 398 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 AL606534.2-204ENST00000635008 178 ntBASIC0.66□□□□□ -2.3
TM9SF3Q9HD45 RNU4-80P-201ENST00000363200 141 ntBASIC0.65□□□□□ -2.31
TM9SF3Q9HD45 RNU6-654P-201ENST00000364373 107 ntBASIC0.65□□□□□ -2.31
TM9SF3Q9HD45 RNU6-1009P-201ENST00000390996 107 ntBASIC0.65□□□□□ -2.31
TM9SF3Q9HD45 RNA5SP95-201ENST00000410319 137 ntBASIC0.65□□□□□ -2.31
TM9SF3Q9HD45 NDUFA4P2-201ENST00000489989 244 ntBASIC0.65□□□□□ -2.31
TM9SF3Q9HD45 COX6CP6-201ENST00000490840 228 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 191.1 ms