Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC093027.1-201ENST00000546698 429 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 JPX_2.1-201ENST00000614161 69 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 AC007742.2-201ENST00000618226 398 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 U8.7-201ENST00000364940 136 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.462-201ENST00000384268 102 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 MIR92A1-201ENST00000385233 78 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 RNU6-733P-201ENST00000410759 104 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 AC067940.1-201ENST00000458411 300 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 AC098869.1-201ENST00000481627 292 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 RPL23AP54-201ENST00000495129 419 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 RNU7-115P-201ENST00000516433 55 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 SNORD116.3-201ENST00000517176 78 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 AC127455.1-201ENST00000565496 145 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 AC087685.1-201ENST00000587507 141 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 AC099654.14-201ENST00000638599 341 ntBASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.116-201ENST00000363292 103 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 RNU6-1209P-201ENST00000363655 107 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 SNORD113.3-201ENST00000364630 78 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.384-201ENST00000383909 102 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 RNU6-994P-201ENST00000410507 111 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 SNRPGP14-201ENST00000435400 219 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 NDUFA4P2-201ENST00000489989 244 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 RNA5SP220-201ENST00000516298 104 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.772-201ENST00000606692 102 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 uc_338.17-201ENST00000619633 179 ntBASIC0.64□□□□□ -2.31
CCDC40Q4G0X9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.796-201ENST00000364268 102 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.799-201ENST00000364992 102 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 RNU6-442P-201ENST00000383968 104 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 RNY1P14-201ENST00000384426 108 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 RNA5SP95-201ENST00000410319 137 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 AC024067.1-201ENST00000426199 223 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 RNU6-830P-201ENST00000516353 107 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 RNU6-1223P-201ENST00000517124 104 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 AP003484.1-201ENST00000530974 250 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 MIR3145-201ENST00000580727 82 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 AC011373.1-201ENST00000607270 237 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 AC084781.2-201ENST00000615568 161 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 MIR548AY-201ENST00000617669 107 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 MIR1302-1-201ENST00000637932 143 ntBASIC0.63□□□□□ -2.31
CCDC40Q4G0X9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.390-201ENST00000383932 102 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.458-201ENST00000384240 102 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 MIR570-201ENST00000384917 97 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 RBMX2P4-201ENST00000441256 376 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 RNU7-110P-201ENST00000516891 62 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 AL355375.2-201ENST00000574825 175 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 MIR5188-201ENST00000583467 113 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 AL132765.2-201ENST00000610812 351 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 AL136317.1-201ENST00000612653 226 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 Pinc.1-201ENST00000616452 154 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 AC091925.1-201ENST00000623204 462 ntBASIC0.62□□□□□ -2.31
CCDC40Q4G0X9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.122-201ENST00000363331 96 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 RNU6-268P-201ENST00000364174 107 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.496-201ENST00000384444 101 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 SNORA2B-201ENST00000384583 137 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 MIR802-201ENST00000390235 94 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 RNU6-613P-201ENST00000410412 108 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 AC005534.2-201ENST00000431047 433 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 HMGN1P10-201ENST00000474557 553 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 MIR5000-201ENST00000577717 103 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 SNORA4-201ENST00000584302 138 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 AC104985.2-201ENST00000620598 500 ntBASIC0.61□□□□□ -2.31
CCDC40Q4G0X9 RNU6-1115P-201ENST00000362490 106 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.187-201ENST00000363918 113 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.370-201ENST00000365589 108 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 RNU6-1067P-201ENST00000384752 107 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 U8.17-201ENST00000391292 132 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 MIR1827-201ENST00000408549 66 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 RNU7-152P-201ENST00000458982 64 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 RNU4-77P-201ENST00000516692 156 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 AC008507.4-201ENST00000585464 127 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 AC012433.1-201ENST00000588916 398 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 AC092447.9-201ENST00000603395 144 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 AL121655.1-201ENST00000605811 308 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 RMST_2.1-201ENST00000617263 136 ntBASIC0.6□□□□□ -2.31
CCDC40Q4G0X9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.269-201ENST00000364685 89 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 RNU6-42P-201ENST00000384165 107 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 Y_RNA.551-201ENST00000384661 102 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 RNU1-119P-201ENST00000391122 165 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 MIR1278-201ENST00000408753 81 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 RNU4-30P-201ENST00000410245 143 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 AC244098.3-201ENST00000424803 96 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 MIR2115-201ENST00000516657 100 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 UBE2V2P2-201ENST00000587677 504 ntBASIC0.59□□□□□ -2.31
CCDC40Q4G0X9 RPS29P30-201ENST00000600975 111 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 191.3 ms