Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 Y_RNA.263-201ENST00000364659 114 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 Y_RNA.330-201ENST00000365230 109 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 Y_RNA.551-201ENST00000384661 102 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 MIR608-201ENST00000384820 100 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 MIR605-201ENST00000385078 83 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AC006461.1-201ENST00000412637 326 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AL160004.2-201ENST00000432935 350 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 MTND5P15-201ENST00000434246 349 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.67□□□□□ -2.3
SHMT2P34897 AC010655.3-201ENST00000478818 450 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AC117454.1-201ENST00000491120 168 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 Y_RNA.661-201ENST00000516003 99 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 RNU7-115P-201ENST00000516433 55 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 RNU7-110P-201ENST00000516891 62 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 RNU6-1223P-201ENST00000517124 104 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AL590095.2-201ENST00000604136 117 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 AC011373.1-201ENST00000607270 237 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 MIR548AY-201ENST00000617669 107 ntBASIC0.67□□□□□ -2.3
SHMT2P34897 RNY1P14-201ENST00000384426 108 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 MIR508-201ENST00000384857 115 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 RNU4-30P-201ENST00000410245 143 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 HMGN1P10-201ENST00000474557 553 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 NDUFA4P2-201ENST00000489989 244 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 PSMC1P5-201ENST00000512850 177 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 RNU6-976P-201ENST00000516086 111 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 Y_RNA.714-201ENST00000517065 90 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 AC136628.3-201ENST00000521868 290 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 AC109810.1-201ENST00000534066 224 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 AC023827.1-201ENST00000569247 97 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 AC087685.1-201ENST00000587507 141 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 AC008133.2-201ENST00000624540 351 ntBASIC0.66□□□□□ -2.3
SHMT2P34897 AC134026.1-201ENST00000623249 2239 ntBASIC0.65□□□□□ -2.3
SHMT2P34897 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
SHMT2P34897 SNORD14E-201ENST00000364009 85 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 Y_RNA.796-201ENST00000364268 102 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 U8.7-201ENST00000364940 136 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 Y_RNA.799-201ENST00000364992 102 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 Y_RNA.315-201ENST00000365117 102 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 RNU6-1335P-201ENST00000365426 107 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 SNORD63-201ENST00000384262 68 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 RNU6-937P-201ENST00000384325 106 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 MIR1302-7-201ENST00000408841 72 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 SNRPGP14-201ENST00000435400 219 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 FABP5P4-201ENST00000437203 171 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 RPL23AP54-201ENST00000495129 419 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.65□□□□□ -2.31
SHMT2P34897 RNU6-507P-201ENST00000516045 100 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 DEFB108E-201ENST00000524692 240 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 MIR5000-201ENST00000577717 103 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 SNORA4-201ENST00000584302 138 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 RPS29P30-201ENST00000600975 111 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 AC112487.2-201ENST00000637950 304 ntBASIC0.65□□□□□ -2.31
SHMT2P34897 Y_RNA.58-201ENST00000362807 102 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 Y_RNA.80-201ENST00000362996 102 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 Y_RNA.154-201ENST00000363624 102 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 RNU6-1209P-201ENST00000363655 107 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 RNY3P1-201ENST00000365085 102 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 Y_RNA.356-201ENST00000365475 113 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 RNY3-201ENST00000365484 102 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 Y_RNA.439-201ENST00000384119 94 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 RNU6-42P-201ENST00000384165 107 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 Y_RNA.485-201ENST00000384395 102 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 SNORD28B-201ENST00000390993 75 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 RNU6-1009P-201ENST00000390996 107 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 RNU6-130P-201ENST00000411112 103 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 AC024067.1-201ENST00000426199 223 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 AL035398.1-201ENST00000430869 322 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 AL392103.1-201ENST00000447000 198 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 PART1_1.1-201ENST00000611761 217 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 JPX_2.1-201ENST00000614161 69 ntBASIC0.64□□□□□ -2.31
SHMT2P34897 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.64□□□□□ -2.31
SHMT2P34897 AC236972.2-201ENST00000434979 310 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 U8.20-201ENST00000459445 131 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 MIR4714-201ENST00000580728 77 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 AL353765.1-201ENST00000605514 183 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 AC007742.2-201ENST00000618226 398 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 MIR6734-201ENST00000621166 68 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 MIR4251-201ENST00000635819 61 ntBASIC0.63□□□□□ -2.31
SHMT2P34897 Y_RNA.122-201ENST00000363331 96 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 Y_RNA.143-201ENST00000363520 106 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 Y_RNA.148-201ENST00000363557 117 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 Y_RNA.286-201ENST00000364813 102 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU6-442P-201ENST00000383968 104 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 SNORD38C-201ENST00000384381 69 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 Y_RNA.526-201ENST00000384572 110 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU6-21P-201ENST00000384710 107 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU6-733P-201ENST00000410759 104 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU2-14P-201ENST00000411053 191 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 MTND5P20-201ENST00000448677 143 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.62□□□□□ -2.31
SHMT2P34897 RNU7-141P-201ENST00000459304 62 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 Y_RNA.702-201ENST00000516843 96 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU11-2P-201ENST00000516898 142 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 Y_RNA.713-201ENST00000517013 96 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 AC036111.3-201ENST00000526389 112 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 AP003484.1-201ENST00000530974 250 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 AC004812.1-201ENST00000540773 146 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 MIR548AR-201ENST00000582191 57 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 257.2 ms