Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AL450471.1-201ENST00000447509 127 ntBASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 AC024995.1-201ENST00000523014 93 ntBASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 AC103810.6-201ENST00000606708 136 ntBASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 MTND4LP19-201ENST00000403051 166 ntBASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 RNU7-153P-201ENST00000516455 62 ntBASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 EIF4BP1-201ENST00000554881 351 ntBASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 SCARNA15.3-201ENST00000626315 122 ntBASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 SCARNA4.1-201ENST00000628597 123 ntBASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC61Q9Y6R9 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 Y_RNA.168-201ENST00000363740 102 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 MIR34C-201ENST00000384831 77 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 SPINT5P-201ENST00000448174 155 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 RN7SL93P-201ENST00000463035 293 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 RNU7-53P-201ENST00000516705 60 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 DNAJC19P9-201ENST00000555084 351 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 AC002546.1-201ENST00000588041 2504 ntBASIC4.6□□□□□ -1.67
CCDC61Q9Y6R9 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 RNU6-624P-201ENST00000363411 107 ntBASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 RNU6-480P-201ENST00000384332 107 ntBASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 MIR206-201ENST00000384872 86 ntBASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 RNA5SP38-201ENST00000410750 119 ntBASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 MIR486-1-201ENST00000612171 68 ntBASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 AC022149.2-201ENST00000621061 203 ntBASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC61Q9Y6R9 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
CCDC61Q9Y6R9 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC61Q9Y6R9 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 Y_RNA.205-201ENST00000364128 113 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RNU6-163P-201ENST00000384396 106 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RNU2-59P-201ENST00000410482 191 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RN7SKP192-201ENST00000411291 327 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 SCARNA18B-201ENST00000458806 135 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 AL163195.1-201ENST00000496941 348 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RNA5SP341-201ENST00000516261 117 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RNU7-181P-201ENST00000517234 74 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 MIR4727-201ENST00000622232 55 ntBASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC61Q9Y6R9 RNU6-865P-201ENST00000364772 107 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 SNORA1.2-201ENST00000365189 134 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 SNORD38.2-201ENST00000384470 69 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 AC004552.1-201ENST00000419089 348 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 AC090543.2-201ENST00000483963 348 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 RNU6-917P-201ENST00000516294 104 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 RNU6-557P-201ENST00000516842 110 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 RNU6-1015P-201ENST00000517121 99 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 AC008163.1-202ENST00000636004 2889 ntBASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC61Q9Y6R9 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 RNU1-18P-201ENST00000363062 164 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 RNA5SP252-201ENST00000391131 119 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 RNU2-63P-201ENST00000410792 194 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 RNA5SP39-201ENST00000411245 120 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 RNA5SP309-201ENST00000516670 106 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 SNORA70.19-201ENST00000516717 90 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 RNVU1-4-201ENST00000612985 164 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 AL162274.2-201ENST00000614406 332 ntBASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC61Q9Y6R9 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 RNU6-686P-201ENST00000364839 107 ntBASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 MIR181B2-201ENST00000385004 89 ntBASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 snoU13.11-201ENST00000459219 104 ntBASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 AC234781.5-201ENST00000508429 271 ntBASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC61Q9Y6R9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 195.1 ms