Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PTCHD1Q96NR3 RNU6-476P-201ENST00000384726 107 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 MIR802-201ENST00000390235 94 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 AL138827.1-201ENST00000402666 306 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 RNU2-52P-201ENST00000410680 190 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 SNRPGP13-201ENST00000442212 177 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 RN7SL297P-201ENST00000483161 293 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 RN7SKP132-201ENST00000516001 208 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 RNU6-1061P-201ENST00000516530 99 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
PTCHD1Q96NR3 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 MIR26A1-201ENST00000362205 77 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 RNU6-647P-201ENST00000364243 107 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 RNU1-112P-201ENST00000364401 164 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 SNORD88.1-201ENST00000408684 91 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 SNORA11.4-201ENST00000408823 129 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 AF228730.3-201ENST00000436691 102 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 MTATP6P21-201ENST00000440681 189 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 RNU7-26P-201ENST00000458980 63 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 SNORA59A-201ENST00000459326 152 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 AC079600.2-201ENST00000550076 130 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 AL022345.2-201ENST00000606307 135 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 AC022513.1-201ENST00000624512 117 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 MIR6733-201ENST00000635723 61 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 U6.95-201ENST00000636931 70 ntBASIC2.59□□□□□ -1.99
PTCHD1Q96NR3 AL391516.1-201ENST00000554380 2449 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 RNU1-58P-201ENST00000362413 163 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 VTRNA1-1-201ENST00000363120 99 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 RNU1-91P-201ENST00000364746 163 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 RNU6-1144P-201ENST00000384247 104 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 RNU6-429P-201ENST00000384582 108 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 MIR548A2-201ENST00000384956 97 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 MIR29C-201ENST00000385231 88 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 SNORA40.5-201ENST00000391061 128 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 AC245047.3-201ENST00000429428 127 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.58□□□□□ -2
PTCHD1Q96NR3 AL606517.2-201ENST00000442855 241 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 AC003982.1-202ENST00000469928 248 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 MIR4762-201ENST00000585261 75 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.58□□□□□ -2
PTCHD1Q96NR3 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
PTCHD1Q96NR3 MTND5P32-201ENST00000560711 1802 ntBASIC2.58□□□□□ -2
PTCHD1Q96NR3 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.58□□□□□ -2
PTCHD1Q96NR3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PTCHD1Q96NR3 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.57□□□□□ -2
PTCHD1Q96NR3 U8.5-201ENST00000364528 136 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 SNORA9.3-201ENST00000516383 129 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 MTND5P34-201ENST00000568888 325 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 MIR3126-201ENST00000577443 74 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 MIR3605-201ENST00000583214 100 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 AC005786.1-201ENST00000588553 154 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 MIR6129-201ENST00000616087 109 ntBASIC2.57□□□□□ -2
PTCHD1Q96NR3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
PTCHD1Q96NR3 AC080100.1-201ENST00000624239 5356 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNU6-1084P-201ENST00000362498 107 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 SNORD14E-201ENST00000364009 85 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 Y_RNA.265-201ENST00000364677 108 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNU6-442P-201ENST00000383968 104 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 Y_RNA.500-201ENST00000384466 111 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNU1-148P-201ENST00000384472 162 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 MIR518F-201ENST00000384973 87 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNA5SP109-201ENST00000391010 116 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 SNORD77.3-201ENST00000391113 65 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNA5SP482-201ENST00000391269 118 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNA5SP21-201ENST00000410917 96 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 Y_RNA.617-201ENST00000410920 90 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.56□□□□□ -2
PTCHD1Q96NR3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.56□□□□□ -2
PTCHD1Q96NR3 Y_RNA.651-201ENST00000459380 103 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 RNA5SP356-201ENST00000515972 94 ntBASIC2.56□□□□□ -2
PTCHD1Q96NR3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.56□□□□□ -2
PTCHD1Q96NR3 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PTCHD1Q96NR3 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PTCHD1Q96NR3 snoU2-30.1-201ENST00000365012 70 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 SNORD58C-201ENST00000365223 64 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 MIR9-1-201ENST00000385198 89 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 AL590004.2-201ENST00000404787 371 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 Y_RNA.630-201ENST00000411370 108 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 BX510359.4-201ENST00000423750 193 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 SNORD109B-201ENST00000458961 67 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 SNORD109A-201ENST00000459128 67 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 RNA5SP236-201ENST00000516169 116 ntBASIC2.55□□□□□ -2
PTCHD1Q96NR3 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
PTCHD1Q96NR3 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
PTCHD1Q96NR3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PTCHD1Q96NR3 Y_RNA.510-201ENST00000384511 114 ntBASIC2.54□□□□□ -2
PTCHD1Q96NR3 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.54□□□□□ -2
PTCHD1Q96NR3 MIR548O-201ENST00000408583 114 ntBASIC2.54□□□□□ -2
PTCHD1Q96NR3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.54□□□□□ -2
PTCHD1Q96NR3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 225.1 ms