Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.24□□□□□ -2.21
HOXC4P09017 Y_RNA.641-201ENST00000459414 105 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 AC005908.1-201ENST00000468701 347 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.24□□□□□ -2.21
HOXC4P09017 SNORD116-28-201ENST00000516123 91 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 RNU2-34P-201ENST00000516534 121 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 MIR6078-201ENST00000611069 100 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 snoU18.1-201ENST00000629629 71 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 U6.108-201ENST00000637764 58 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 AC134026.1-201ENST00000623249 2239 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.24□□□□□ -2.21
HOXC4P09017 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
HOXC4P09017 RNU6-862P-201ENST00000362804 105 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 snoU2-30.2-201ENST00000362805 70 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 Y_RNA.122-201ENST00000363331 96 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 Y_RNA.164-201ENST00000363709 102 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXC4P09017 RNU6-763P-201ENST00000390865 106 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RNU1-78P-201ENST00000391248 165 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 MIR873-201ENST00000401120 77 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 MIR1267-201ENST00000408723 78 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 MIR548H3-201ENST00000408771 118 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RNU6-855P-201ENST00000410395 104 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RNA5SP511-201ENST00000410487 115 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 AC008134.1-201ENST00000420943 193 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RPS26P55-201ENST00000471178 356 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RPS27P22-201ENST00000478056 241 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RPL36AP21-201ENST00000490372 323 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 RNU7-128P-201ENST00000517247 62 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.23□□□□□ -2.21
HOXC4P09017 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.23□□□□□ -2.21
HOXC4P09017 MIR5094-201ENST00000578766 85 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 AL512605.2-201ENST00000592972 256 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 AC011921.3-201ENST00000605540 361 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 AL008718.3-201ENST00000610217 321 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.23□□□□□ -2.21
HOXC4P09017 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.23□□□□□ -2.21
HOXC4P09017 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXC4P09017 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
HOXC4P09017 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
HOXC4P09017 RNU1-22P-201ENST00000363334 158 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 Y_RNA.341-201ENST00000365341 102 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 RNU6-117P-201ENST00000365415 107 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 RNU6-514P-201ENST00000384208 107 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 Y_RNA.489-201ENST00000384410 101 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 SNORD58.1-201ENST00000391313 66 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 MIR1253-201ENST00000408273 105 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 RNU6-1186P-201ENST00000410429 97 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 EBAG9P1-201ENST00000418955 543 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 BTF3P11-201ENST00000426582 477 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 FTH1P12-201ENST00000432137 551 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 AC245517.4-201ENST00000448601 281 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 RPS20P10-201ENST00000451209 253 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 ATP5J2P3-201ENST00000451550 258 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 RPS29P29-201ENST00000456396 171 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 RNY3P16-201ENST00000516338 101 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 AC068338.1-201ENST00000565567 176 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 MIR4438-201ENST00000585271 93 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 AC037487.3-201ENST00000606668 112 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXC4P09017 AC004832.4-201ENST00000608952 331 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 U6.73-201ENST00000619194 103 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 AC245060.5-201ENST00000610778 3293 ntBASIC1.22□□□□□ -2.21
HOXC4P09017 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
HOXC4P09017 RNU6-1272P-201ENST00000362776 107 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 RNU1-96P-201ENST00000364163 162 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 RNU4-10P-201ENST00000364383 140 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 Y_RNA.368-201ENST00000365547 113 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 RNU6-211P-201ENST00000384047 107 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 MTCO2P33-201ENST00000402100 465 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.21□□□□□ -2.22
HOXC4P09017 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.21□□□□□ -2.22
HOXC4P09017 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.21□□□□□ -2.22
HOXC4P09017 AC097462.1-201ENST00000514125 324 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 AC136628.3-201ENST00000521868 290 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 AC130289.1-201ENST00000577321 73 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 MIR4282-201ENST00000583613 67 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 AL162424.1-201ENST00000602325 221 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 AC069114.2-201ENST00000604699 304 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.21□□□□□ -2.22
HOXC4P09017 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.82-201ENST00000363000 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.92-201ENST00000363043 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.235-201ENST00000364412 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.238-201ENST00000364441 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.257-201ENST00000364596 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.292-201ENST00000364904 97 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 U8.7-201ENST00000364940 136 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.306-201ENST00000365015 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.312-201ENST00000365089 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.322-201ENST00000365151 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 RNU6-53P-201ENST00000365367 106 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 SNORA72.4-201ENST00000384174 132 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.478-201ENST00000384358 107 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 RNU6-296P-201ENST00000384608 107 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 Y_RNA.572-201ENST00000384757 98 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 MIR520A-201ENST00000384862 85 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 RNU6-907P-201ENST00000390924 102 ntBASIC1.2□□□□□ -2.22
HOXC4P09017 AC108059.2-201ENST00000434626 151 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 217.9 ms