Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU6-893P-201ENST00000458841 100 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-65P-201ENST00000516332 98 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC109329.2-201ENST00000519658 482 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 MIR6076-201ENST00000617521 113 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-690P-201ENST00000365242 106 ntBASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 SNORA67.4-201ENST00000384688 142 ntBASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.593-201ENST00000410292 98 ntBASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-693P-201ENST00000516134 107 ntBASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR337-201ENST00000362281 93 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.17-201ENST00000362433 111 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-234P-201ENST00000365229 104 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 HSPE1P26-201ENST00000405341 275 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 EIF4EP4-201ENST00000424916 578 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 NDUFA4P2-201ENST00000489989 244 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU2-34P-201ENST00000516534 121 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNA5SP395-201ENST00000516567 118 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR5197-201ENST00000583721 112 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC090517.3-201ENST00000625170 141 ntBASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.344-201ENST00000365381 112 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.540-201ENST00000384638 111 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR548D2-201ENST00000384955 97 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR520G-201ENST00000385064 90 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNA5SP425-201ENST00000410336 112 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC244505.4-201ENST00000434905 287 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 SNRPGP13-201ENST00000442212 177 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 SSXP5-201ENST00000443473 287 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RPL30P14-201ENST00000482744 348 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 SCARNA23-201ENST00000516060 130 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU1-61P-201ENST00000516107 151 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 DEFB131E-201ENST00000532329 154 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 ZNF861P-201ENST00000588126 639 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AL162726.3-218ENST00000636401 95 ntBASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.69□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR1255A-201ENST00000408338 113 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC016909.1-201ENST00000415916 166 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RPL39P25-201ENST00000449384 154 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 SNRPGP3-201ENST00000469405 227 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 HMGN1P7-201ENST00000491722 313 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.666-201ENST00000516187 112 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-1096P-201ENST00000517089 102 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC021443.1-201ENST00000604478 211 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR6817-201ENST00000615588 66 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC008264.2-201ENST00000610193 3731 ntBASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-486P-201ENST00000363116 107 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNA5SP68-201ENST00000363885 119 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNY1P1-201ENST00000364372 112 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 SNORA25.9-201ENST00000365087 128 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-198P-201ENST00000384258 104 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-242P-201ENST00000384359 107 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR1912-201ENST00000410389 80 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.621-201ENST00000411065 96 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC097463.2-201ENST00000421074 142 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC022137.1-201ENST00000483735 151 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR3163-201ENST00000581592 73 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 IGLL4P-201ENST00000614590 133 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR8070-201ENST00000616510 88 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR6733-201ENST00000635723 61 ntBASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 GABRG2-229ENST00000641017 3628 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNY3P2-201ENST00000362918 102 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.298-201ENST00000364960 107 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RNU6-418P-201ENST00000384035 107 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 MIR548A2-201ENST00000384956 97 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 RPL39P39-201ENST00000455840 151 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 AC008507.4-201ENST00000585464 127 ntBASIC3.66□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
SENP3-EIF4A1A0A087X0R7 Y_RNA.221-201ENST00000364248 96 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-438P-201ENST00000365561 103 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNA5SP210-201ENST00000391034 120 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU11-5P-201ENST00000391216 129 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 U8.17-201ENST00000391292 132 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 SNRPGP10-201ENST00000432323 225 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 SUMO2P16-201ENST00000519475 264 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC087685.1-201ENST00000587507 141 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 183.9 ms