Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.198-201ENST00000364013 98 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-117P-201ENST00000365415 107 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.366-201ENST00000365540 102 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC245102.2-201ENST00000448956 180 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-1098P-201ENST00000516772 96 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR3609-201ENST00000582661 80 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC010733.2-201ENST00000589496 5702 ntBASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MAPK10-266ENST00000641066 6555 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-1209P-201ENST00000363655 107 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.362-201ENST00000365518 110 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 SNORD14D-201ENST00000384390 87 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR759-201ENST00000390224 91 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU2-32P-201ENST00000411193 191 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RPS29P6-201ENST00000438196 145 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 JPX_2.1-201ENST00000614161 69 ntBASIC3.85□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC009487.4-201ENST00000624969 3585 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.213-201ENST00000364178 111 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 SNORD32B-201ENST00000364460 84 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-1134P-201ENST00000365156 101 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC023141.4-201ENST00000412031 328 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 HMGN2P3-201ENST00000433603 273 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 HMGN2P5-201ENST00000436882 273 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU7-170P-201ENST00000459303 61 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC011406.1-201ENST00000512440 370 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC012531.5-201ENST00000611375 151 ntBASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AP001486.2-201ENST00000561652 5113 ntBASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR494-201ENST00000349529 81 ntBASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNA5SP189-201ENST00000364920 115 ntBASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC068339.1-201ENST00000526965 141 ntBASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORD6-201ENST00000365444 73 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORA1-201ENST00000384107 130 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6-975P-201ENST00000384296 105 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNA5SP274-201ENST00000410484 108 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6-57P-201ENST00000411348 103 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU7-14P-201ENST00000459331 62 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC005921.1-201ENST00000510589 286 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6-1149P-201ENST00000516810 97 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC026421.1-201ENST00000519101 163 ntBASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR302B-201ENST00000362188 73 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR499A-201ENST00000384903 122 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR512-1-201ENST00000384913 84 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RPS4XP11-201ENST00000446897 772 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORD109B-201ENST00000458961 67 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORD109A-201ENST00000459128 67 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC107297.1-201ENST00000459991 176 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RN7SL499P-201ENST00000481141 276 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR4498-201ENST00000577599 66 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR622-201ENST00000638396 96 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC010889.1-201ENST00000566193 2666 ntBASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.81□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC010680.1-201ENST00000590024 3590 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 Y_RNA.93-201ENST00000363066 109 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6-414P-201ENST00000363705 104 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU1-112P-201ENST00000364401 164 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC008134.1-201ENST00000420943 193 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 snoU13.28-201ENST00000459235 104 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC112771.1-201ENST00000463581 102 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RPS27P22-201ENST00000478056 241 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC096725.1-201ENST00000514266 313 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6-904P-201ENST00000516206 101 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC141557.1-201ENST00000540982 400 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC011604.1-201ENST00000545978 196 ntBASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms