Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 MIR6079-201ENST00000635807 62 ntBASIC2.37□□□□□ -2.03
PCDHGA3Q9Y5H0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.37□□□□□ -2.03
PCDHGA3Q9Y5H0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
PCDHGA3Q9Y5H0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 Y_RNA.60-201ENST00000362831 98 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 Y_RNA.122-201ENST00000363331 96 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU6-379P-201ENST00000363813 104 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 SNORA72-201ENST00000384339 132 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 RNA5SP501-201ENST00000410990 112 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 BTF3P11-201ENST00000426582 477 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 MTND1P19-201ENST00000511780 315 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU7-115P-201ENST00000516433 55 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU7-128P-201ENST00000517247 62 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 AC084364.2-201ENST00000546924 395 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 SUB1P4-201ENST00000566062 339 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 POLR3GP1-201ENST00000594073 261 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 AC013791.1-201ENST00000616619 62 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR548AY-201ENST00000617669 107 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 U6.108-201ENST00000637764 58 ntBASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
PCDHGA3Q9Y5H0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 RNA5SP456-201ENST00000364002 114 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 SNORD116-13-201ENST00000384408 92 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR520A-201ENST00000384862 85 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR504-201ENST00000385065 83 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU6-763P-201ENST00000390865 106 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 AC104332.1-201ENST00000440471 797 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 SNORD2.1-201ENST00000458762 69 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 Y_RNA.638-201ENST00000459374 113 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 Y_RNA.637-201ENST00000459424 114 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 COX6CP14-201ENST00000469580 174 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 AC234781.5-201ENST00000508429 271 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU6-237P-201ENST00000515985 71 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU6-63P-201ENST00000516690 95 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 IGKV3-31-201ENST00000523109 329 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR5692C2-201ENST00000577959 77 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR4648-201ENST00000580107 72 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 MIR5092-201ENST00000583139 88 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 AC005336.3-201ENST00000623833 2679 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 AC016717.2-201ENST00000609089 5141 ntBASIC2.35□□□□□ -2.03
PCDHGA3Q9Y5H0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 Y_RNA.65-201ENST00000362846 100 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU6-211P-201ENST00000384047 107 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 RNA5SP212-201ENST00000391223 107 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 RN7SKP223-201ENST00000410582 62 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 RNU7-141P-201ENST00000459304 62 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 RNA5SP481-201ENST00000516814 122 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 AC010900.2-201ENST00000604508 210 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 AL442067.1-201ENST00000613261 223 ntBASIC2.34□□□□□ -2.03
PCDHGA3Q9Y5H0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-1205P-201ENST00000363625 106 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.172-201ENST00000363765 102 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 RNY1-201ENST00000364228 113 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-136P-201ENST00000384663 107 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 SNORA26.5-201ENST00000391215 123 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 MTCO2P33-201ENST00000402100 465 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU2-7P-201ENST00000410794 178 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 AL158823.1-201ENST00000418441 478 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 AL135790.2-201ENST00000437701 267 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 RNVU1-2-201ENST00000516326 135 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.680-201ENST00000516441 93 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-1096P-201ENST00000517089 102 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-111P-201ENST00000517179 105 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 AP002004.2-201ENST00000531656 154 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR2681-201ENST00000581814 105 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 AC091178.2-201ENST00000584401 117 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 AC005357.1-201ENST00000588399 301 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR7843-201ENST00000622274 79 ntBASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.117-201ENST00000363294 101 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 U8.7-201ENST00000364940 136 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.539-201ENST00000384635 107 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 AL512604.1-201ENST00000404812 257 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU7-28P-201ENST00000516759 62 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 AC024405.2-202ENST00000532731 184 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 AC127455.1-201ENST00000565496 145 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR1273D-201ENST00000577266 86 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 AC103810.6-201ENST00000606708 136 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR1291-201ENST00000627649 87 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 AC100821.1-201ENST00000523153 2479 ntBASIC2.32□□□□□ -2.04
PCDHGA3Q9Y5H0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms