Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RNU6-86P-201ENST00000606534 107 ntBASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 AL353149.1-201ENST00000610667 244 ntBASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC61Q9Y6R9 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC61Q9Y6R9 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
CCDC61Q9Y6R9 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC61Q9Y6R9 SNORD68-201ENST00000363214 84 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 SNORD115-27-201ENST00000364430 82 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 AC093259.1-201ENST00000509755 300 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 SCARNA13-201ENST00000516672 275 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 AP002004.2-201ENST00000531656 154 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 U4.6-201ENST00000621618 127 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 AP003355.3-201ENST00000623465 114 ntBASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC61Q9Y6R9 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 Y_RNA.336-201ENST00000365307 109 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 POLR2J4-204ENST00000418424 324 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 AC090844.1-201ENST00000422019 156 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 RPS12P2-201ENST00000439728 269 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 RNU6-579P-201ENST00000516879 102 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 RNU6-856P-201ENST00000516959 98 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 SCARNA3-201ENST00000517097 143 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 MIR8057-201ENST00000620957 69 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 AC087190.4-201ENST00000574616 8334 ntBASIC4.89□□□□□ -1.63
CCDC61Q9Y6R9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 AC010733.2-201ENST00000589496 5702 ntBASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 Y_RNA.340-201ENST00000365330 92 ntBASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 SNORA27-201ENST00000384323 126 ntBASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 RN7SKP111-201ENST00000410349 271 ntBASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 AC090255.1-201ENST00000495779 349 ntBASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC61Q9Y6R9 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 SNORA48.2-201ENST00000390926 124 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 Z98742.3-201ENST00000418637 326 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 AC244505.4-201ENST00000434905 287 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 SSXP5-201ENST00000443473 287 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 RNU7-96P-201ENST00000459535 64 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 RNU7-128P-201ENST00000517247 62 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 IGKV2-26-201ENST00000518305 343 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 MIR7112-201ENST00000616126 65 ntBASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC61Q9Y6R9 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 RNU6-998P-201ENST00000515894 101 ntBASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 MIR4765-201ENST00000585007 77 ntBASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 MIR4762-201ENST00000585261 75 ntBASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
CCDC61Q9Y6R9 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 RNU6-1094P-201ENST00000362416 104 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 SNORA1B-201ENST00000362535 133 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 AP000567.1-201ENST00000406413 156 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 RNA5SP112-201ENST00000515937 99 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 RNU6-586P-201ENST00000517265 104 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 AP000867.2-201ENST00000532468 320 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 AC140658.3-201ENST00000567603 271 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 ZNF861P-201ENST00000588126 639 ntBASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC61Q9Y6R9 AC005336.3-201ENST00000623833 2679 ntBASIC4.84□□□□□ -1.63
CCDC61Q9Y6R9 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC61Q9Y6R9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC61Q9Y6R9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC61Q9Y6R9 snoU2-30.2-201ENST00000362805 70 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 221.4 ms