Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC39Q9UFE4 AC092435.3-201ENST00000565538 3654 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 AL136360.1-201ENST00000503377 1900 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 RNU6-573P-201ENST00000383938 106 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 MIR624-201ENST00000385217 97 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 AL139095.1-201ENST00000404326 391 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 AC009414.1-201ENST00000427200 443 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 RNU1-104P-201ENST00000517280 175 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC39Q9UFE4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 AC000403.1-201ENST00000613696 3585 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 RNU6-748P-201ENST00000384648 107 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 RNU6-440P-201ENST00000390882 105 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 SNORA12-201ENST00000391162 147 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP127-201ENST00000411051 133 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 AC023141.4-201ENST00000412031 328 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 CALM2P4-201ENST00000430810 426 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 HMGN2P9-201ENST00000476875 229 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 RNU6-63P-201ENST00000516690 95 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 AC004486.1-201ENST00000546846 233 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 AC105245.1-201ENST00000581934 244 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 AC091152.3-201ENST00000604227 325 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 RNU6-91P-201ENST00000607774 107 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 AC090115.4-201ENST00000609970 188 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 uc_338.4-201ENST00000616635 176 ntBASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC39Q9UFE4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP374-201ENST00000362939 125 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 RNU6-1014P-201ENST00000383940 103 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MIR570-201ENST00000384917 97 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MIR1289-1-201ENST00000408836 144 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MTATP6P21-201ENST00000440681 189 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 AC083906.5-201ENST00000503722 328 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 RNU6-970P-201ENST00000516312 107 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MIR3670-2-201ENST00000582974 65 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MIR3670-1-201ENST00000584160 65 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MIR3670-3-201ENST00000584855 65 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 MIR3670-4-201ENST00000612260 65 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 AC002064.3-201ENST00000623448 346 ntBASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC39Q9UFE4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 RNU6-271P-201ENST00000363858 105 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 SNORA9.2-201ENST00000365361 133 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 SNORD21-201ENST00000383953 95 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 Y_RNA.544-201ENST00000384650 113 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 RNU2-49P-201ENST00000410666 184 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 AC022018.1-201ENST00000430685 241 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 AF228730.3-201ENST00000436691 102 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 RPL39P34-201ENST00000477141 156 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP281-201ENST00000516504 135 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 AC012493.2-201ENST00000595083 291 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 AL929325.1-201ENST00000603096 117 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 AL442128.1-201ENST00000615151 90 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC39Q9UFE4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 MIR422A-201ENST00000362286 90 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNU6-1210P-201ENST00000363775 107 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNU6-1113P-201ENST00000384348 107 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNY1P7-201ENST00000384743 110 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNA5SP136-201ENST00000410906 107 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNU2-32P-201ENST00000411193 191 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNU6-592P-201ENST00000411333 103 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RPS3AP1-201ENST00000413190 320 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 SNORD65B-201ENST00000459126 73 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 Y_RNA.685-201ENST00000516532 108 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RNU6-56P-201ENST00000516986 93 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 AC025647.1-201ENST00000517879 253 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 RPL23AP91-201ENST00000569211 455 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 AL365205.2-201ENST00000594586 68 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 AC007179.3-201ENST00000604976 235 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 AC096577.2-201ENST00000611455 153 ntBASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CCDC39Q9UFE4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 snoU2_19.1-201ENST00000362361 80 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 SNORD46.1-201ENST00000364139 104 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 Y_RNA.323-201ENST00000365157 109 ntBASIC3.28□□□□□ -1.88
CCDC39Q9UFE4 MIR592-201ENST00000384959 97 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 216.6 ms