Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-117P-201ENST00000365415 107 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 Y_RNA.445-201ENST00000384168 102 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 RNU6-474P-201ENST00000384243 107 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 Y_RNA.526-201ENST00000384572 110 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 RNU2-54P-201ENST00000410299 190 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 RNA5SP475-201ENST00000410568 110 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 RNU6-1199P-201ENST00000411249 104 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.4□□□□□ -2.19
LIME1Q9H400 AC005002.2-201ENST00000438228 269 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 RPS26P55-201ENST00000471178 356 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 AC023157.2-201ENST00000540596 141 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.4□□□□□ -2.19
LIME1Q9H400 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.4□□□□□ -2.19
LIME1Q9H400 AC006157.1-201ENST00000611750 366 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.4□□□□□ -2.19
LIME1Q9H400 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.4□□□□□ -2.19
LIME1Q9H400 WWP1P1-201ENST00000466609 2769 ntBASIC1.4□□□□□ -2.19
LIME1Q9H400 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LIME1Q9H400 Y_RNA.124-201ENST00000363339 93 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 SNORA7.1-201ENST00000363750 139 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 RNU6-20P-201ENST00000384106 107 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 Y_RNA.458-201ENST00000384240 102 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 Y_RNA.570-201ENST00000384750 101 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 MIR7-2-201ENST00000384970 110 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 MIR30A-201ENST00000385092 71 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 RNA5SP323-201ENST00000391094 133 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 HSPE1P21-201ENST00000438283 308 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 RPEP5-201ENST00000441137 268 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 snoU13.27-201ENST00000459278 104 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 RPS27P22-201ENST00000478056 241 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 AC008834.1-201ENST00000511612 175 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 AC005176.2-201ENST00000596933 147 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 AC022441.3-201ENST00000605737 136 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 AC004467.1-201ENST00000615678 330 ntBASIC1.39□□□□□ -2.19
LIME1Q9H400 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.39□□□□□ -2.19
LIME1Q9H400 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
LIME1Q9H400 AC005592.1-201ENST00000566527 1640 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 Y_RNA.138-201ENST00000363462 102 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 SNORA4.2-201ENST00000365313 147 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 Y_RNA.462-201ENST00000384268 102 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 SNORA12.1-201ENST00000390873 148 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 RNU6-308P-201ENST00000390957 107 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 RNA5SP109-201ENST00000391010 116 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 RPL21P1-201ENST00000399532 476 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 RNU6-1186P-201ENST00000410429 97 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 JTBP1-201ENST00000441314 247 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 AC073910.1-201ENST00000445047 438 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 Y_RNA.631-201ENST00000459607 101 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.38□□□□□ -2.19
LIME1Q9H400 RNA5SP20-201ENST00000515976 84 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 RNU6-966P-201ENST00000516479 104 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 Y_RNA.711-201ENST00000516993 102 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 SNORA44.1-201ENST00000517031 108 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.38□□□□□ -2.19
LIME1Q9H400 SNORA77B-201ENST00000578179 125 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 MIR4452-201ENST00000583004 71 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 AL390123.1-201ENST00000603216 237 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 AC134503.1-201ENST00000633048 54 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.38□□□□□ -2.19
LIME1Q9H400 AC245060.5-201ENST00000610778 3293 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 AC018630.2-201ENST00000534866 2403 ntBASIC1.38□□□□□ -2.19
LIME1Q9H400 MIR424-201ENST00000362227 98 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 Y_RNA.28-201ENST00000362554 111 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU6-626P-201ENST00000363354 107 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 Y_RNA.128-201ENST00000363391 112 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 Y_RNA.191-201ENST00000363972 113 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU4-50P-201ENST00000364361 141 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU6-338P-201ENST00000383888 105 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 Y_RNA.485-201ENST00000384395 102 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 MIR194-1-201ENST00000384892 85 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
LIME1Q9H400 MIR1323-201ENST00000408090 73 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU2-7P-201ENST00000410794 178 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AL354751.2-201ENST00000415471 210 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 FTH1P12-201ENST00000432137 551 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU7-94P-201ENST00000459576 63 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AC099513.1-201ENST00000490423 301 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 SNORA31.10-201ENST00000516482 106 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNA5SP102-201ENST00000516865 106 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU1-92P-201ENST00000517017 135 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 RNU7-172P-201ENST00000517125 64 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AC027419.1-201ENST00000522976 328 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AC040926.1-201ENST00000530195 238 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AC091178.2-201ENST00000584401 117 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AC073413.2-201ENST00000604332 360 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.37□□□□□ -2.19
LIME1Q9H400 MIR8074-201ENST00000615081 81 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AL157834.3-201ENST00000615543 103 ntBASIC1.37□□□□□ -2.19
LIME1Q9H400 AC091812.1-201ENST00000432235 1948 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 MIR302D-201ENST00000362275 68 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 RNU6-414P-201ENST00000363705 104 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 RNU6-950P-201ENST00000384651 107 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 Y_RNA.645-201ENST00000391229 102 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 AL031003.1-201ENST00000404229 172 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 MIR548P-201ENST00000408336 84 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 RNU6-130P-201ENST00000411112 103 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.36□□□□□ -2.19
LIME1Q9H400 HSPE1P13-201ENST00000451143 297 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 291.6 ms