Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 RN7SL297P-201ENST00000483161 293 ntBASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 AC145146.1-201ENST00000496370 254 ntBASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 RNU7-116P-201ENST00000516940 62 ntBASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 AL159152.1-201ENST00000635019 2587 ntBASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 AC073325.2-201ENST00000339545 159 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.85-201ENST00000363014 111 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.91-201ENST00000363042 107 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.163-201ENST00000363702 113 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 RNA5SP173-201ENST00000364857 136 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 SNORA51.5-201ENST00000384126 131 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 SNORA51.10-201ENST00000384418 136 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC104332.2-201ENST00000429959 156 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AL121890.1-201ENST00000435457 205 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AL161651.1-201ENST00000440882 223 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 RPL36AP21-201ENST00000490372 323 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 RNA5SP153-201ENST00000516498 76 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 RNU6-826P-201ENST00000516827 104 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC107016.2-201ENST00000547968 190 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 MIR3944-201ENST00000581277 108 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC005972.2-201ENST00000604690 348 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC062037.1-201ENST00000605302 128 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 MIR92B-201ENST00000607575 96 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC093732.2-201ENST00000607950 274 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC009831.4-201ENST00000620744 325 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AC007318.2-201ENST00000620999 243 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AP003122.5-201ENST00000527668 3766 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 AL035425.3-201ENST00000564206 4996 ntBASIC3.38□□□□□ -1.87
CCDC39Q9UFE4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 AC009487.2-201ENST00000420969 6821 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.52-201ENST00000362760 96 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 SNORA71.1-201ENST00000364523 117 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 MIR1263-201ENST00000408324 86 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 MIR1185-2-201ENST00000408687 86 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 RN7SKP220-201ENST00000410611 288 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 snoU13.14-201ENST00000459372 104 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 AC006445.1-201ENST00000491925 405 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 AC007012.1-201ENST00000567192 175 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 AC097639.2-201ENST00000603159 172 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 MIR1245B-201ENST00000636115 69 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 MIR3199-2-201ENST00000636243 86 ntBASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
CCDC39Q9UFE4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 RNU6-1305P-201ENST00000364353 104 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.634-201ENST00000364811 113 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 RNA5SP125-201ENST00000364843 120 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.549-201ENST00000384657 102 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 SNORD12C-201ENST00000386307 89 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 RNU2-70P-201ENST00000410718 179 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 AC107626.1-201ENST00000471084 183 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 AC008885.1-201ENST00000514930 301 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 SNORA40.13-201ENST00000516379 120 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 RPS15AP11-201ENST00000594193 385 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 YPEL5P2-201ENST00000605553 359 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 AC004944.1-201ENST00000517807 3059 ntBASIC3.36□□□□□ -1.87
CCDC39Q9UFE4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 Y_RNA.528-201ENST00000384575 108 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 MIR586-201ENST00000385035 97 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 MIR891A-201ENST00000401237 79 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 MIR1302-5-201ENST00000408164 150 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 EDDM3CP-201ENST00000415977 425 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 AL021397.1-201ENST00000451806 248 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 BX510359.1-201ENST00000456973 237 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 RPL27AP5-201ENST00000469428 449 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 AL161431.1-201ENST00000618966 4205 ntBASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC39Q9UFE4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 AL356292.1-201ENST00000283110 373 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 SNORA27.1-201ENST00000362604 124 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 RNU6-1010P-201ENST00000362757 107 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 MIR488-201ENST00000365739 83 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 SNORA54-201ENST00000384281 123 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 MIR181A2-201ENST00000384863 110 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 RPS3P1-201ENST00000456781 192 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 RPS26P55-201ENST00000471178 356 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 SNORD77.4-201ENST00000516158 81 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 SNORA18.4-201ENST00000516440 124 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 HSPE1P18-201ENST00000517602 280 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 AC008739.2-201ENST00000597006 317 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 UCA1.1-201ENST00000620952 75 ntBASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC39Q9UFE4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 185.6 ms