Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
USP44Q9H0E7 RNU6-661P-201ENST00000362409 107 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 RNU6-450P-201ENST00000364654 107 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 Y_RNA.326-201ENST00000365176 113 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 Y_RNA.424-201ENST00000384063 103 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 MIR1323-201ENST00000408090 73 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 AL603825.1-201ENST00000438481 80 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 Y_RNA.638-201ENST00000459374 113 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.96□□□□□ -2.1
USP44Q9H0E7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.96□□□□□ -2.1
USP44Q9H0E7 AC055872.1-201ENST00000570978 278 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 AL359075.3-201ENST00000613288 217 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.96□□□□□ -2.1
USP44Q9H0E7 AC010205.1-201ENST00000616668 449 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 MIR3674-201ENST00000636576 68 ntBASIC1.96□□□□□ -2.1
USP44Q9H0E7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
USP44Q9H0E7 RNU6-112P-201ENST00000363599 104 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 Y_RNA.158-201ENST00000363651 101 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 RNU6-271P-201ENST00000363858 105 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 RNU6-454P-201ENST00000364292 107 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 RNU6-360P-201ENST00000390944 104 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 AC108667.1-201ENST00000428618 249 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 RNU1-142P-201ENST00000516682 145 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.95□□□□□ -2.1
USP44Q9H0E7 MIR4680-201ENST00000580906 66 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 AL390123.1-201ENST00000603216 237 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 AC124312.5-201ENST00000604451 268 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 AL121655.1-201ENST00000605811 308 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 AL021879.1-201ENST00000611756 288 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 PART1_1.1-201ENST00000611761 217 ntBASIC1.95□□□□□ -2.1
USP44Q9H0E7 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
USP44Q9H0E7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
USP44Q9H0E7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
USP44Q9H0E7 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU4-13P-201ENST00000364019 141 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 SNORA63D-201ENST00000364359 132 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU6-60P-201ENST00000364792 103 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 Y_RNA.389-201ENST00000383924 113 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU6-20P-201ENST00000384106 107 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU6-950P-201ENST00000384651 107 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU6-130P-201ENST00000411112 103 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.94□□□□□ -2.1
USP44Q9H0E7 RPEP5-201ENST00000441137 268 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU7-94P-201ENST00000459576 63 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNA5SP458-201ENST00000516188 119 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 Y_RNA.713-201ENST00000517013 96 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 AC022616.4-201ENST00000522985 181 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.94□□□□□ -2.1
USP44Q9H0E7 AC084364.2-201ENST00000546924 395 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.94□□□□□ -2.1
USP44Q9H0E7 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.94□□□□□ -2.1
USP44Q9H0E7 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.94□□□□□ -2.1
USP44Q9H0E7 RNU6-626P-201ENST00000363354 107 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 RNU4-50P-201ENST00000364361 141 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 Y_RNA.287-201ENST00000364853 94 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.93□□□□□ -2.1
USP44Q9H0E7 AC117470.1-201ENST00000381974 330 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 Y_RNA.471-201ENST00000384312 102 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 Y_RNA.527-201ENST00000384573 102 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 RNU4-62P-201ENST00000410125 130 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 RPL36AP21-201ENST00000490372 323 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 Y_RNA.715-201ENST00000517082 110 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 MIR4719-201ENST00000585233 84 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 AC012493.3-201ENST00000604494 112 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 AC004467.1-201ENST00000615678 330 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 U6.73-201ENST00000619194 103 ntBASIC1.93□□□□□ -2.1
USP44Q9H0E7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USP44Q9H0E7 Y_RNA.101-201ENST00000363154 102 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNU1-42P-201ENST00000364033 160 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 Y_RNA.230-201ENST00000364348 109 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNU6-296P-201ENST00000384608 107 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 Y_RNA.551-201ENST00000384661 102 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNU6-417P-201ENST00000384712 107 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNA5SP323-201ENST00000391094 133 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNU6-101P-201ENST00000410323 104 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNU2-7P-201ENST00000410794 178 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.92□□□□□ -2.1
USP44Q9H0E7 SNORD65B-201ENST00000459126 73 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 U8.20-201ENST00000459445 131 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 RNU7-99P-201ENST00000516271 62 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 Y_RNA.721-201ENST00000517207 102 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 MIR3198-2-201ENST00000577868 80 ntBASIC1.92□□□□□ -2.1
USP44Q9H0E7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.92□□□□□ -2.1
USP44Q9H0E7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USP44Q9H0E7 SNORA63-201ENST00000363450 132 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 Y_RNA.455-201ENST00000384230 98 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 MIR562-201ENST00000384894 95 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 MIR1252-201ENST00000408861 65 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 AL390729.2-201ENST00000416137 156 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 AC245047.4-201ENST00000433189 144 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.91□□□□□ -2.1
USP44Q9H0E7 AC113195.1-201ENST00000579952 141 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 AC005176.2-201ENST00000596933 147 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 AP000942.3-201ENST00000603702 160 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 BX248123.2-201ENST00000606318 124 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 AC005828.6-201ENST00000606610 232 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 Y_RNA.772-201ENST00000606692 102 ntBASIC1.91□□□□□ -2.1
USP44Q9H0E7 Y_RNA.812-201ENST00000610788 101 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 215.7 ms