Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.11□□□□□ -2.23
CCDC43Q96MW1 MIR562-201ENST00000384894 95 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 Y_RNA.594-201ENST00000410373 140 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 AC074085.1-201ENST00000413598 418 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 MRPL35P3-201ENST00000421557 364 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC43Q96MW1 AC245047.7-201ENST00000440265 293 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 U8.22-201ENST00000459141 133 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC43Q96MW1 RNU6-322P-201ENST00000516010 103 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 RNU6-1291P-201ENST00000516591 104 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC43Q96MW1 U6.115-201ENST00000636045 103 ntBASIC1.11□□□□□ -2.23
CCDC43Q96MW1 RNY1P16-201ENST00000363063 111 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 SNORA2.2-201ENST00000365473 135 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 SNORA22-201ENST00000383907 134 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 RNU6-1080P-201ENST00000383982 107 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 SNORA22C-201ENST00000384614 134 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 RNU6-1050P-201ENST00000410388 107 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 AC022493.2-201ENST00000506122 481 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 Y_RNA.670-201ENST00000516255 105 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 AP002004.2-201ENST00000531656 154 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 AC018448.1-201ENST00000552843 316 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 AC103810.9-201ENST00000606688 112 ntBASIC1.1□□□□□ -2.23
CCDC43Q96MW1 Y_RNA.363-201ENST00000365529 113 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 RNU6-136P-201ENST00000384663 107 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 MIR548F1-201ENST00000408667 84 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC43Q96MW1 MTCYBP10-201ENST00000424905 650 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AL353997.1-201ENST00000432936 108 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC002429.1-201ENST00000437672 148 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AL137792.2-201ENST00000443484 235 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 UBL5P1-201ENST00000507979 193 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC074133.1-201ENST00000515696 183 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 RNU6-1016P-201ENST00000516689 94 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC022868.1-201ENST00000517767 391 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC105029.1-201ENST00000520250 669 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 AC018638.8-201ENST00000588755 281 ntBASIC1.09□□□□□ -2.23
CCDC43Q96MW1 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
CCDC43Q96MW1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 Y_RNA.86-201ENST00000363020 111 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 Y_RNA.358-201ENST00000365491 99 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 MIR19B1-201ENST00000384829 87 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 RNU6-510P-201ENST00000391239 108 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 RNA5SP482-201ENST00000391269 118 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 MIR548F5-201ENST00000408421 86 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC104332.1-201ENST00000440471 797 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 UBE2V1P7-201ENST00000446395 340 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC233266.1-201ENST00000454518 96 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AP002001.1-203ENST00000534002 267 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AL117336.2-201ENST00000602435 335 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC242852.1-201ENST00000612151 96 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC090517.2-201ENST00000614966 680 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC012676.2-201ENST00000619258 186 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC244015.1-201ENST00000622301 99 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 AC127459.3-201ENST00000624328 466 ntBASIC1.08□□□□□ -2.24
CCDC43Q96MW1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC43Q96MW1 RNU6-454P-201ENST00000364292 107 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 RNU6-1215P-201ENST00000384441 102 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 MIR548K-201ENST00000408406 116 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 RNA5SP475-201ENST00000410568 110 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC43Q96MW1 AC063976.4-201ENST00000421971 163 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 RPS3AP52-201ENST00000435639 297 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 AL049830.1-201ENST00000468034 425 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 SNORD79.1-201ENST00000516069 84 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 RNU6-1278P-201ENST00000516130 107 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 RNU6-718P-201ENST00000516166 105 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 AL357312.1-201ENST00000603879 298 ntBASIC1.07□□□□□ -2.24
CCDC43Q96MW1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC43Q96MW1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC43Q96MW1 MIRLET7C-201ENST00000362160 84 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.06□□□□□ -2.24
CCDC43Q96MW1 AC092423.1-201ENST00000430165 186 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 RPL39P39-201ENST00000455840 151 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 RNU6-625P-201ENST00000459412 107 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 SNORD124-201ENST00000459577 104 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 RPL7P42-201ENST00000481005 679 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 RNU6-113P-201ENST00000516653 101 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 RNU6-1116P-201ENST00000517269 99 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 MIR3674-201ENST00000636576 68 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC43Q96MW1 AL391516.1-201ENST00000554380 2449 ntBASIC1.06□□□□□ -2.24
CCDC43Q96MW1 MIR410-201ENST00000362222 80 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 Y_RNA.124-201ENST00000363339 93 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 RNU6-593P-201ENST00000364716 112 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 RNU6-117P-201ENST00000365415 107 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 RNU6-318P-201ENST00000384283 103 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 SNORD12-201ENST00000391002 90 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 MIR873-201ENST00000401120 77 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 MIR1276-201ENST00000408707 83 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 RNU5A-5P-201ENST00000411054 116 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 Z98949.2-201ENST00000440996 144 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 Y_RNA.708-201ENST00000516950 96 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 239.4 ms