Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC005176.2-201ENST00000596933 147 ntBASIC1.42□□□□□ -2.18
CDX1P47902 AL162424.1-201ENST00000602325 221 ntBASIC1.42□□□□□ -2.18
CDX1P47902 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.41□□□□□ -2.18
CDX1P47902 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-1123P-201ENST00000362347 106 ntBASIC1.41□□□□□ -2.18
CDX1P47902 Y_RNA.27-201ENST00000362540 103 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-20P-201ENST00000384106 107 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-708P-201ENST00000384217 107 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-136P-201ENST00000384663 107 ntBASIC1.41□□□□□ -2.18
CDX1P47902 MIR562-201ENST00000384894 95 ntBASIC1.41□□□□□ -2.18
CDX1P47902 MIR764-201ENST00000390811 85 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-482P-201ENST00000391068 107 ntBASIC1.41□□□□□ -2.18
CDX1P47902 MTATP6P23-201ENST00000440153 476 ntBASIC1.41□□□□□ -2.18
CDX1P47902 AL137792.2-201ENST00000443484 235 ntBASIC1.41□□□□□ -2.18
CDX1P47902 AC099513.1-201ENST00000490423 301 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNA5SP445-201ENST00000515889 115 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-970P-201ENST00000516312 107 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU6-1012P-201ENST00000516606 109 ntBASIC1.41□□□□□ -2.18
CDX1P47902 RNU2-56P-201ENST00000516826 190 ntBASIC1.41□□□□□ -2.18
CDX1P47902 SUMO2P16-201ENST00000519475 264 ntBASIC1.41□□□□□ -2.18
CDX1P47902 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.41□□□□□ -2.18
CDX1P47902 AC092447.9-201ENST00000603395 144 ntBASIC1.41□□□□□ -2.18
CDX1P47902 SNORA28-201ENST00000606769 126 ntBASIC1.41□□□□□ -2.18
CDX1P47902 AC040896.1-201ENST00000613819 479 ntBASIC1.41□□□□□ -2.18
CDX1P47902 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
CDX1P47902 MIR302D-201ENST00000362275 68 ntBASIC1.4□□□□□ -2.19
CDX1P47902 Y_RNA.39-201ENST00000362620 98 ntBASIC1.4□□□□□ -2.19
CDX1P47902 Y_RNA.124-201ENST00000363339 93 ntBASIC1.4□□□□□ -2.19
CDX1P47902 Y_RNA.265-201ENST00000364677 108 ntBASIC1.4□□□□□ -2.19
CDX1P47902 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.4□□□□□ -2.19
CDX1P47902 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.4□□□□□ -2.19
CDX1P47902 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.4□□□□□ -2.19
CDX1P47902 STAG3L5P-204ENST00000443759 179 ntBASIC1.4□□□□□ -2.19
CDX1P47902 AC245517.4-201ENST00000448601 281 ntBASIC1.4□□□□□ -2.19
CDX1P47902 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.4□□□□□ -2.19
CDX1P47902 AC091021.1-201ENST00000468051 388 ntBASIC1.4□□□□□ -2.19
CDX1P47902 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.4□□□□□ -2.19
CDX1P47902 MIR4419B-201ENST00000577260 68 ntBASIC1.4□□□□□ -2.19
CDX1P47902 MIR3618-201ENST00000580330 88 ntBASIC1.4□□□□□ -2.19
CDX1P47902 AC005828.6-201ENST00000606610 232 ntBASIC1.4□□□□□ -2.19
CDX1P47902 AC240442.1-201ENST00000616055 283 ntBASIC1.4□□□□□ -2.19
CDX1P47902 AL121890.5-201ENST00000620848 304 ntBASIC1.4□□□□□ -2.19
CDX1P47902 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CDX1P47902 RNU6-324P-201ENST00000363957 106 ntBASIC1.39□□□□□ -2.19
CDX1P47902 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.39□□□□□ -2.19
CDX1P47902 RNU6-1065P-201ENST00000384513 106 ntBASIC1.39□□□□□ -2.19
CDX1P47902 MIR9-3-201ENST00000385084 90 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC027119.1-201ENST00000440877 241 ntBASIC1.39□□□□□ -2.19
CDX1P47902 PGBD4P5-201ENST00000445958 426 ntBASIC1.39□□□□□ -2.19
CDX1P47902 CHEK2P4-201ENST00000450340 246 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC233266.1-201ENST00000454518 96 ntBASIC1.39□□□□□ -2.19
CDX1P47902 RNU1-98P-201ENST00000458992 160 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.39□□□□□ -2.19
CDX1P47902 SNORA70.12-201ENST00000516084 153 ntBASIC1.39□□□□□ -2.19
CDX1P47902 RNU6-902P-201ENST00000517212 91 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC055872.1-201ENST00000570978 278 ntBASIC1.39□□□□□ -2.19
CDX1P47902 MIR3683-201ENST00000580847 82 ntBASIC1.39□□□□□ -2.19
CDX1P47902 MIR4769-201ENST00000584126 77 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AL390123.1-201ENST00000603216 237 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC242852.1-201ENST00000612151 96 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AL353997.5-201ENST00000618886 171 ntBASIC1.39□□□□□ -2.19
CDX1P47902 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC104985.2-201ENST00000620598 500 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC244015.1-201ENST00000622301 99 ntBASIC1.39□□□□□ -2.19
CDX1P47902 AC084768.2-201ENST00000622736 221 ntBASIC1.39□□□□□ -2.19
CDX1P47902 MIR4272-201ENST00000635924 64 ntBASIC1.39□□□□□ -2.19
CDX1P47902 U6.92-201ENST00000636464 89 ntBASIC1.39□□□□□ -2.19
CDX1P47902 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
CDX1P47902 RNU6-1115P-201ENST00000362490 106 ntBASIC1.38□□□□□ -2.19
CDX1P47902 SNORD114-7-201ENST00000362520 77 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU4-79P-201ENST00000362764 141 ntBASIC1.38□□□□□ -2.19
CDX1P47902 Y_RNA.101-201ENST00000363154 102 ntBASIC1.38□□□□□ -2.19
CDX1P47902 Y_RNA.579-201ENST00000390939 94 ntBASIC1.38□□□□□ -2.19
CDX1P47902 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU2-54P-201ENST00000410299 190 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AC022028.1-201ENST00000412054 408 ntBASIC1.38□□□□□ -2.19
CDX1P47902 CYCSP49-201ENST00000420810 319 ntBASIC1.38□□□□□ -2.19
CDX1P47902 SNX2P2-201ENST00000424553 323 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AL135790.2-201ENST00000437701 267 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AC003989.2-201ENST00000440224 169 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU6-976P-201ENST00000516086 111 ntBASIC1.38□□□□□ -2.19
CDX1P47902 SNORA25.15-201ENST00000516487 89 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU6-63P-201ENST00000516690 95 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU6-250P-201ENST00000516958 103 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU6-341P-201ENST00000516973 96 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RNU2-12P-201ENST00000517216 168 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.38□□□□□ -2.19
CDX1P47902 MIR4255-201ENST00000579351 72 ntBASIC1.38□□□□□ -2.19
CDX1P47902 RPS29P30-201ENST00000600975 111 ntBASIC1.38□□□□□ -2.19
CDX1P47902 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AC073349.3-201ENST00000617616 186 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AL138825.1-201ENST00000618587 192 ntBASIC1.38□□□□□ -2.19
CDX1P47902 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.38□□□□□ -2.19
CDX1P47902 AL008636.1-201ENST00000625038 1018 ntBASIC1.38□□□□□ -2.19
CDX1P47902 SNORD3E-202ENST00000627253 216 ntBASIC1.38□□□□□ -2.19
CDX1P47902 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
CDX1P47902 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
CDX1P47902 RNA5SP432-201ENST00000362480 116 ntBASIC1.37□□□□□ -2.19
CDX1P47902 SNORD115-30-201ENST00000364117 82 ntBASIC1.37□□□□□ -2.19
CDX1P47902 AF228730.4-201ENST00000421457 183 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 239.4 ms