Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 RNU6-1001P-201ENST00000411265 100 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 AL356379.1-201ENST00000414105 126 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 PMCHL1-202ENST00000423102 261 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.12□□□□□ -2.07
USP44Q9H0E7 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.12□□□□□ -2.07
USP44Q9H0E7 AC074133.1-201ENST00000515696 183 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 RNU4-77P-201ENST00000516692 156 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.12□□□□□ -2.07
USP44Q9H0E7 MZT1P2-201ENST00000604387 248 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 AL353149.1-201ENST00000610667 244 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 AL590240.4-201ENST00000616908 390 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 SDR42E1P4-201ENST00000620894 481 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 snoZ196.1-201ENST00000625269 89 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 AC134503.1-201ENST00000633048 54 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 MIR4272-201ENST00000635924 64 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 AL159152.1-201ENST00000635019 2587 ntBASIC2.12□□□□□ -2.07
USP44Q9H0E7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
USP44Q9H0E7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.12□□□□□ -2.07
USP44Q9H0E7 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.12□□□□□ -2.07
USP44Q9H0E7 AL359851.1-201ENST00000569460 4997 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 ZNF702P-202ENST00000434269 1966 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU6-727P-201ENST00000363592 107 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU6-879P-201ENST00000364328 108 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU4-76P-201ENST00000364509 141 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU1-115P-201ENST00000365329 160 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU6-318P-201ENST00000384283 103 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 MIR515-2-201ENST00000384883 83 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 MIR515-1-201ENST00000384884 83 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 MIR329-1-201ENST00000385028 80 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 AL078595.1-201ENST00000404458 226 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.11□□□□□ -2.07
USP44Q9H0E7 RPL23AP3-201ENST00000453844 468 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU7-57P-201ENST00000459540 60 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 Y_RNA.631-201ENST00000459607 101 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 SNORA25.15-201ENST00000516487 89 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU6-911P-201ENST00000516523 104 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 MIR514B-201ENST00000516774 80 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNA5SP364-201ENST00000516938 78 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 AC044792.1-201ENST00000593294 196 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.11□□□□□ -2.07
USP44Q9H0E7 AC006157.1-201ENST00000611750 366 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 AC007485.1-201ENST00000616755 206 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 U2.1-201ENST00000618978 145 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP44Q9H0E7 MTND5P35-201ENST00000557537 1720 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 ZNF72P-201ENST00000425869 1908 ntBASIC2.11□□□□□ -2.07
USP44Q9H0E7 RNU6-1301P-201ENST00000362724 104 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 Y_RNA.80-201ENST00000362996 102 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 Y_RNA.128-201ENST00000363391 112 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 RNU6-694P-201ENST00000364071 147 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 RNA5SP190-201ENST00000365222 118 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 RNU6-1145P-201ENST00000384246 107 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 Y_RNA.485-201ENST00000384395 102 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 MTND1P14-201ENST00000427400 950 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.1□□□□□ -2.07
USP44Q9H0E7 ATP5J2P3-201ENST00000451550 258 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 AC112492.4-201ENST00000456549 352 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 RNU6-221P-201ENST00000459541 99 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.1□□□□□ -2.07
USP44Q9H0E7 RN7SKP49-201ENST00000516675 260 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 RNU1-117P-201ENST00000517041 158 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 AC020661.2-201ENST00000560114 134 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 MIR4287-201ENST00000579398 78 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 SNORD58B-201ENST00000607313 66 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.1□□□□□ -2.07
USP44Q9H0E7 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.1□□□□□ -2.07
USP44Q9H0E7 RNA5SP99-201ENST00000364020 114 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 SNORD87-201ENST00000364849 89 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 Y_RNA.415-201ENST00000384012 112 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 RNU6-418P-201ENST00000384035 107 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 SNORA17.3-201ENST00000391159 129 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 MIR548P-201ENST00000408336 84 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 MTCYBP6-201ENST00000441810 138 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 MTND4P19-201ENST00000446659 478 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 SNORD13-201ENST00000459299 104 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 RN7SKP295-201ENST00000517264 153 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 AP005660.1-201ENST00000522972 293 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 AK6P2-201ENST00000549020 471 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 AC006600.1-201ENST00000572529 153 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 MIR3618-201ENST00000580330 88 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.09□□□□□ -2.07
USP44Q9H0E7 AC083806.3-201ENST00000614016 455 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 AL357075.2-201ENST00000614906 189 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 AL606534.2-204ENST00000635008 178 ntBASIC2.09□□□□□ -2.07
USP44Q9H0E7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.08
USP44Q9H0E7 Y_RNA.216-201ENST00000364205 93 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 RNU6-708P-201ENST00000384217 107 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 MCFD2P1-201ENST00000417812 300 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 AC096920.1-201ENST00000423991 241 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 TOMM22P2-201ENST00000430735 237 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.08□□□□□ -2.08
USP44Q9H0E7 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USP44Q9H0E7 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.08□□□□□ -2.08
USP44Q9H0E7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.08□□□□□ -2.08
USP44Q9H0E7 MIR3171-201ENST00000584270 74 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 VN1R91P-201ENST00000594377 169 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 AL773524.1-201ENST00000614065 229 ntBASIC2.08□□□□□ -2.08
USP44Q9H0E7 AL138825.1-201ENST00000618587 192 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 269.8 ms