Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 RPL23AP7-203ENST00000449021 469 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 CENPBD1P1-201ENST00000464061 469 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 RNU6-586P-201ENST00000517265 104 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 AC109329.2-201ENST00000519658 482 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 MIR4431-201ENST00000579990 94 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 AL713866.2-201ENST00000603579 219 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 AC007179.3-201ENST00000604976 235 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 Y_RNA.778-201ENST00000620203 90 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 snoZ196.1-201ENST00000625269 89 ntBASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTCHD1Q96NR3 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 Y_RNA.172-201ENST00000363765 102 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 RNU6-151P-201ENST00000364158 107 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 SNORA20B-201ENST00000384220 132 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 RNU6-131P-201ENST00000391144 107 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 RNA5SP120-201ENST00000410900 112 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC005326.1-201ENST00000429197 123 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AL162725.1-201ENST00000435405 301 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AL121890.1-201ENST00000435457 205 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 HSPE1P21-201ENST00000438283 308 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 ATP5EP1-201ENST00000510257 156 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 SCARNA8-201ENST00000515924 131 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 SNORD116-25-201ENST00000516517 92 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC090616.3-201ENST00000582184 217 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC023043.3-201ENST00000593113 385 ntBASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.11□□□□□ -1.91
PTCHD1Q96NR3 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 U8.7-201ENST00000364940 136 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 SNORA70.4-201ENST00000365509 134 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU6-144P-201ENST00000383951 107 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU6-975P-201ENST00000384296 105 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU6-1081P-201ENST00000384537 107 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 Y_RNA.568-201ENST00000384742 113 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 MIR616-201ENST00000385293 97 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RPL30P4-201ENST00000429309 333 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RPL23AP83-201ENST00000434984 473 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RPS29P12-201ENST00000460178 152 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RPS27P29-201ENST00000463110 252 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 AC010401.1-201ENST00000463867 348 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU6-1337P-201ENST00000516525 95 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU6-1007P-201ENST00000516586 107 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU7-121P-201ENST00000516604 62 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 RNU6-453P-201ENST00000516819 85 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 AC109810.1-201ENST00000534066 224 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 MIR5688-201ENST00000580619 83 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 AC096577.2-201ENST00000611455 153 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 uc_338.1-201ENST00000612113 180 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 AC091895.1-201ENST00000624494 256 ntBASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
PTCHD1Q96NR3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 SNORA27.1-201ENST00000362604 124 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 RNA5SP387-201ENST00000364226 106 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 SNORD31B-201ENST00000364977 69 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 RNU6-1328P-201ENST00000410938 106 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 RNU6-57P-201ENST00000411348 103 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 TRIAP1P1-201ENST00000427062 225 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 MICF-203ENST00000432679 129 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AC006028.1-201ENST00000438379 402 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 RPS12P18-201ENST00000442381 270 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 HSPE1P13-201ENST00000451143 297 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AC245047.8-201ENST00000456455 284 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 RNU6-221P-201ENST00000459541 99 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 RN7SL807P-201ENST00000470923 297 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AC107027.2-201ENST00000512197 115 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 MIR4724-201ENST00000579485 89 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AC068647.2-201ENST00000637380 353 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 AL159152.1-201ENST00000635019 2587 ntBASIC3.09□□□□□ -1.91
PTCHD1Q96NR3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.09□□□□□ -1.92
PTCHD1Q96NR3 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.92
PTCHD1Q96NR3 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 MIR367-201ENST00000362299 68 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 RNU6-271P-201ENST00000363858 105 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 RNU6-818P-201ENST00000364837 108 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 Y_RNA.333-201ENST00000365274 102 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 188.3 ms