Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
COL9A1P20849 MIR126-201ENST00000362291 85 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 Y_RNA.437-201ENST00000384113 113 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 RNU6-788P-201ENST00000390967 104 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 FTH1P12-201ENST00000432137 551 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 RNU2-11P-201ENST00000459191 187 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 RNU7-80P-201ENST00000459562 61 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC4.31□□□□□ -1.72
COL9A1P20849 AC113410.1-201ENST00000505029 247 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 RNA5SP112-201ENST00000515937 99 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 Y_RNA.676-201ENST00000516393 96 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 AC006441.5-201ENST00000612680 209 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 AC012531.4-201ENST00000616509 177 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 MIR8057-201ENST00000620957 69 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 AC006386.2-201ENST00000624491 75 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 AC012005.1-201ENST00000624575 75 ntBASIC4.31□□□□□ -1.72
COL9A1P20849 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL9A1P20849 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL9A1P20849 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL9A1P20849 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL9A1P20849 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL9A1P20849 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL9A1P20849 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL9A1P20849 RNU6-661P-201ENST00000362409 107 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 SNORD115-28-201ENST00000363931 81 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 Y_RNA.454-201ENST00000384224 113 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 SNORA74C-2-201ENST00000411179 201 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 AL592156.1-201ENST00000508758 304 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 AC104619.4-201ENST00000510773 249 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 SNORA4.4-201ENST00000515921 135 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 RNA5SP73-201ENST00000516744 108 ntBASIC4.3□□□□□ -1.72
COL9A1P20849 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.3□□□□□ -1.72
COL9A1P20849 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.3□□□□□ -1.72
COL9A1P20849 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.3□□□□□ -1.72
COL9A1P20849 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.3□□□□□ -1.72
COL9A1P20849 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.29□□□□□ -1.72
COL9A1P20849 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 AC087190.4-201ENST00000574616 8334 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL9A1P20849 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL9A1P20849 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL9A1P20849 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 Y_RNA.37-201ENST00000362606 108 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 Y_RNA.313-201ENST00000365095 103 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 Y_RNA.426-201ENST00000384068 113 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 MIR921-201ENST00000401133 56 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 RNU6-402P-201ENST00000410678 103 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 RNU6-733P-201ENST00000410759 104 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 COTL1P1-201ENST00000422309 375 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 AL139247.1-201ENST00000422768 325 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 AC106707.2-201ENST00000484182 374 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 RNU7-99P-201ENST00000516271 62 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 RNU6-795P-201ENST00000516323 103 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.29□□□□□ -1.72
COL9A1P20849 MIR4765-201ENST00000585007 77 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC4.29□□□□□ -1.72
COL9A1P20849 DLEU2_5.2-201ENST00000610606 84 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 U2.20-201ENST00000613956 192 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 MIR8058-201ENST00000615737 89 ntBASIC4.29□□□□□ -1.72
COL9A1P20849 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL9A1P20849 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
COL9A1P20849 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.28□□□□□ -1.72
COL9A1P20849 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL9A1P20849 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.28□□□□□ -1.72
COL9A1P20849 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.28□□□□□ -1.72
COL9A1P20849 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 RNU6-363P-201ENST00000362895 105 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 Y_RNA.155-201ENST00000363632 101 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 Y_RNA.360-201ENST00000365512 102 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 SNORA18-201ENST00000384416 132 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 MIR577-201ENST00000385196 96 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL9A1P20849 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 RNU2-35P-201ENST00000516446 142 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 CYCSP30-201ENST00000546447 172 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 MIR8069-1-201ENST00000616627 86 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 FAS-AS1.2-201ENST00000620386 170 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 MIR8069-2-201ENST00000621412 86 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 AL049781.1-201ENST00000623195 3585 ntBASIC4.28□□□□□ -1.72
COL9A1P20849 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.28□□□□□ -1.72
COL9A1P20849 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.28□□□□□ -1.72
COL9A1P20849 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL9A1P20849 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.28□□□□□ -1.72
COL9A1P20849 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.73
COL9A1P20849 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
COL9A1P20849 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL9A1P20849 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL9A1P20849 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
COL9A1P20849 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.27□□□□□ -1.73
COL9A1P20849 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL9A1P20849 SNORD115-19-201ENST00000363098 82 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 215.3 ms