Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR3529-201ENST00000637713 78 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AL356489.2-201ENST00000566968 3528 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-778P-201ENST00000363269 103 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU1-73P-201ENST00000383971 164 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR208B-201ENST00000401172 77 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNA5SP390-201ENST00000410191 113 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC244098.2-201ENST00000422068 99 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SNORA31.16-201ENST00000516773 139 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR378D2-201ENST00000580636 98 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC046143.2-201ENST00000609789 160 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 FTX_3.1-201ENST00000610451 147 ntBASIC4.34□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.114-201ENST00000363265 113 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORD58C-201ENST00000365223 64 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORA20B-201ENST00000384220 132 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORA12.1-201ENST00000390873 148 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AL512604.1-201ENST00000404812 257 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AL139281.1-201ENST00000422120 335 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DEFB122-202ENST00000569013 197 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC009163.5-201ENST00000575421 637 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 uc_338.1-201ENST00000612113 180 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-335P-201ENST00000364563 113 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORA26.2-201ENST00000390922 122 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 CYCSP49-201ENST00000420810 319 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 TOMM22P2-201ENST00000430735 237 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 HMGN1P18-201ENST00000457642 277 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC090525.1-201ENST00000479116 478 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORA70.12-201ENST00000516084 153 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORA31.8-201ENST00000516327 108 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORD11B-201ENST00000607707 90 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 U7.8-201ENST00000619968 63 ntBASIC4.32□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 U8.1-201ENST00000362843 134 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORD45.3-201ENST00000363836 72 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-647P-201ENST00000364243 107 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-1280P-201ENST00000365211 107 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.346-201ENST00000365385 112 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 snoU13.15-201ENST00000459407 104 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC103975.1-201ENST00000482506 483 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-344P-201ENST00000516635 111 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC027176.1-201ENST00000560204 514 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MIR3136-201ENST00000583498 78 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 uc_338.28-201ENST00000612082 187 ntBASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC4.31□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MIR325-201ENST00000385260 98 ntBASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNA5SP229-201ENST00000410809 99 ntBASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 snoU13.4-201ENST00000458916 104 ntBASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC093331.1-201ENST00000521474 169 ntBASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC090897.2-201ENST00000581715 130 ntBASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AL356274.2-201ENST00000624379 3752 ntBASIC4.3□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNA5SP99-201ENST00000364020 114 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 U8.6-201ENST00000364939 135 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-294P-201ENST00000364999 102 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.338-201ENST00000365320 114 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.355-201ENST00000365462 98 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-217P-201ENST00000384164 104 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.622-201ENST00000411091 108 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC099548.1-201ENST00000421443 426 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Z82209.1-201ENST00000422141 2135 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AL365496.1-201ENST00000426885 215 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNA5SP458-201ENST00000516188 119 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC104027.1-201ENST00000521887 300 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AL031274.2-201ENST00000599419 203 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORD98-201ENST00000636377 67 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC068205.3-201ENST00000636385 468 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 207.1 ms