Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-1282P-201ENST00000516735 96 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 RNU6-711P-201ENST00000517255 106 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 MIR3121-201ENST00000579680 77 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 MIR3609-201ENST00000582661 80 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 MIR3158-1-201ENST00000583596 81 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 AL162713.1-201ENST00000604480 262 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 RNU1-62P-201ENST00000362599 164 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RNU1-70P-201ENST00000362618 164 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.229-201ENST00000364347 113 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RNU1-100P-201ENST00000365255 165 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RNU6-728P-201ENST00000365375 104 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RNU6-140P-201ENST00000384566 108 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 AL031003.1-201ENST00000404229 172 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RNA5SP38-201ENST00000410750 119 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RNA5SP344-201ENST00000411081 104 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RPL21P10-201ENST00000463521 490 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 RN7SL293P-201ENST00000481765 281 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 SNORA67.7-201ENST00000516664 135 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 SNORA31.23-201ENST00000517219 133 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 AC006133.1-201ENST00000617106 264 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 snoZ196.1-201ENST00000625269 89 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 U2.21-201ENST00000637295 81 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 CENPCP1-201ENST00000533085 2578 ntBASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC39Q9UFE4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 SNORD115-30-201ENST00000364117 82 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 RNU6-1264P-201ENST00000383891 107 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.495-201ENST00000384435 112 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 FTH1P15-201ENST00000406984 280 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 CYCSP49-201ENST00000420810 319 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.757-201ENST00000578934 114 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 MIR5688-201ENST00000580619 83 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AL356575.1-201ENST00000603008 283 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 HSPE1P7-201ENST00000604681 321 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AL670379.3-201ENST00000605040 251 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 AC008555.8-201ENST00000623602 2168 ntBASIC3.68□□□□□ -1.82
CCDC39Q9UFE4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 RNU6-778P-201ENST00000363269 103 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 RNU6-1205P-201ENST00000363625 106 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 RNU6-1082P-201ENST00000364574 107 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.368-201ENST00000365547 113 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.415-201ENST00000384012 112 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 SNORA18.3-201ENST00000384122 132 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 MIR490-201ENST00000384865 128 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 MIR449B-201ENST00000384995 97 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 RNU6-710P-201ENST00000410424 105 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 AC092047.1-201ENST00000424997 240 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 RPL39P29-201ENST00000447779 157 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 SNORA84-201ENST00000459229 133 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.651-201ENST00000459380 103 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 SNORA31.16-201ENST00000516773 139 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 MIR6134-201ENST00000617606 109 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 AC093908.1-201ENST00000623125 8092 ntBASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC39Q9UFE4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.35-201ENST00000362601 101 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNA5SP119-201ENST00000362715 117 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU1-33P-201ENST00000364249 162 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU6-32P-201ENST00000383948 107 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU6-13P-201ENST00000384248 107 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 SNORD116-21-201ENST00000384507 92 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU6-12P-201ENST00000384604 107 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU6-41P-201ENST00000384741 107 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNY4P30-201ENST00000410216 95 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RN7SKP284-201ENST00000411002 343 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.630-201ENST00000411370 108 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU7-141P-201ENST00000459304 62 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 RNU6-107P-201ENST00000516643 102 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 MIR3529-201ENST00000637713 78 ntBASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC39Q9UFE4 U3.9-201ENST00000363823 204 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.280-201ENST00000364765 112 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 219.4 ms