Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.44□□□□□ -1.7
COL9A1P20849 DHX9P1-201ENST00000436565 3076 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 RNU6-944P-201ENST00000364023 107 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 SNORA2.2-201ENST00000365473 135 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 RNU6-418P-201ENST00000384035 107 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 MIR518F-201ENST00000384973 87 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 RNU11-5P-201ENST00000391216 129 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 RN7SKP156-201ENST00000410308 342 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 AC096949.1-201ENST00000412047 152 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 AC097463.2-201ENST00000421074 142 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 AC073261.1-201ENST00000429409 121 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 CYCSP35-201ENST00000451978 304 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 RNU1-61P-201ENST00000516107 151 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 RNU7-70P-201ENST00000516941 66 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.44□□□□□ -1.7
COL9A1P20849 AC022254.1-201ENST00000567857 235 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 AC079587.1-201ENST00000603846 277 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 AC090517.3-201ENST00000625170 141 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 MIR376A2-201ENST00000636782 80 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.44□□□□□ -1.7
COL9A1P20849 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.43□□□□□ -1.7
COL9A1P20849 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.43□□□□□ -1.7
COL9A1P20849 RNU6-1099P-201ENST00000363533 107 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 RNY1P6-201ENST00000384193 109 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 AL133162.1-201ENST00000463228 453 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 S100A11P1-201ENST00000477525 312 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 Y_RNA.714-201ENST00000517065 90 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 AL359075.3-201ENST00000613288 217 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 Z95331.1-201ENST00000623075 23112 ntBASIC4.43□□□□□ -1.7
COL9A1P20849 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.43□□□□□ -1.7
COL9A1P20849 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL9A1P20849 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.43□□□□□ -1.7
COL9A1P20849 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.43□□□□□ -1.7
COL9A1P20849 AC107068.1-201ENST00000563286 4218 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL9A1P20849 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL9A1P20849 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL9A1P20849 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.42□□□□□ -1.7
COL9A1P20849 RNU6-1189P-201ENST00000383958 107 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 RNU6-675P-201ENST00000384236 104 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 RNU6-198P-201ENST00000384258 104 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 HMGN2P8-201ENST00000391458 268 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 AL451046.2-201ENST00000403074 277 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 RNA5SP497-201ENST00000516081 97 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 AC019288.1-201ENST00000557918 224 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.42□□□□□ -1.7
COL9A1P20849 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL9A1P20849 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL9A1P20849 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.42□□□□□ -1.7
COL9A1P20849 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL9A1P20849 MFSD8-236ENST00000641509 4050 ntBASIC4.42□□□□□ -1.7
COL9A1P20849 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
COL9A1P20849 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL9A1P20849 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL9A1P20849 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL9A1P20849 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.41□□□□□ -1.7
COL9A1P20849 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL9A1P20849 Y_RNA.253-201ENST00000364562 112 ntBASIC4.41□□□□□ -1.7
COL9A1P20849 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.41□□□□□ -1.7
COL9A1P20849 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.41□□□□□ -1.7
COL9A1P20849 AC025518.1-201ENST00000479856 347 ntBASIC4.41□□□□□ -1.7
COL9A1P20849 RPL30P14-201ENST00000482744 348 ntBASIC4.41□□□□□ -1.7
COL9A1P20849 RNU7-61P-201ENST00000515897 61 ntBASIC4.41□□□□□ -1.7
COL9A1P20849 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.41□□□□□ -1.7
COL9A1P20849 MIR4660-201ENST00000583549 74 ntBASIC4.41□□□□□ -1.7
COL9A1P20849 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
COL9A1P20849 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
COL9A1P20849 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
COL9A1P20849 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL9A1P20849 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL9A1P20849 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
COL9A1P20849 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL9A1P20849 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL9A1P20849 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
COL9A1P20849 CEP170P1-201ENST00000502249 4587 ntBASIC4.4□□□□□ -1.7
COL9A1P20849 FAM35DP-201ENST00000323387 2712 ntBASIC4.4□□□□□ -1.7
COL9A1P20849 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.4□□□□□ -1.7
COL9A1P20849 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.4□□□□□ -1.7
COL9A1P20849 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.4□□□□□ -1.7
COL9A1P20849 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL9A1P20849 Y_RNA.96-201ENST00000363092 109 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 RNU6-438P-201ENST00000365561 103 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 RNU1-63P-201ENST00000383902 164 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 Z74021.1-201ENST00000423610 407 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 RN7SL812P-201ENST00000493791 279 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.4□□□□□ -1.71
COL9A1P20849 RNU7-123P-201ENST00000515911 60 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 RNA5SP519-201ENST00000516480 119 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 226.1 ms