Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL670379.3-201ENST00000605040 251 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL110115.1-201ENST00000614396 364 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC090132.2-201ENST00000615881 347 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ZNF702P-202ENST00000434269 1966 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC118273.1-201ENST00000525324 3006 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC004925.1-201ENST00000624256 2706 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-32P-201ENST00000383948 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORA70B-201ENST00000384210 135 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-13P-201ENST00000384248 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-12P-201ENST00000384604 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-41P-201ENST00000384741 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Y_RNA.572-201ENST00000384757 98 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR518D-201ENST00000385014 87 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-1228P-201ENST00000391014 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR320B2-201ENST00000408479 138 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC074117.2-201ENST00000417130 397 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AIMP1P2-201ENST00000425294 312 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL357552.1-201ENST00000445254 415 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AP000705.1-201ENST00000454567 350 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC007215.1-201ENST00000464893 276 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-579P-201ENST00000516879 102 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-703P-201ENST00000516946 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-548P-201ENST00000517083 115 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR5004-201ENST00000579078 107 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL359198.2-201ENST00000611836 194 ntBASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.49□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Z73965.1-201ENST00000623412 2297 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Y_RNA.4-201ENST00000362333 112 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU1-62P-201ENST00000362599 164 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Z98749.2-208ENST00000381646 500 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Y_RNA.495-201ENST00000384435 112 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORA40.5-201ENST00000391061 128 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RPL26P27-201ENST00000414397 437 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC012306.1-201ENST00000423267 114 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 IFNWP4-201ENST00000453148 294 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Y_RNA.651-201ENST00000459380 103 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RPS29P24-201ENST00000486345 171 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC020895.1-201ENST00000595362 272 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC093732.2-201ENST00000607950 274 ntBASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.48□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 CENPCP1-201ENST00000533085 2578 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-1264P-201ENST00000383891 107 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC244670.1-201ENST00000436879 112 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL135790.2-201ENST00000437701 267 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RPL39P29-201ENST00000447779 157 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC146507.2-201ENST00000460608 476 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC090142.3-201ENST00000519012 385 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 CR383656.8-201ENST00000549046 145 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MED28P6-201ENST00000558776 231 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AP003355.3-201ENST00000623465 114 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC068700.1-201ENST00000565862 3754 ntBASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.46□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORD116-21-201ENST00000384507 92 ntBASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORA26.3-201ENST00000391119 136 ntBASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL606845.1-201ENST00000404881 255 ntBASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL714022.1-201ENST00000439897 151 ntBASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC245517.4-201ENST00000448601 281 ntBASIC4.46□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-727P-201ENST00000363592 107 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-1205P-201ENST00000363625 106 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.508-201ENST00000384502 114 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.584-201ENST00000391090 114 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC126124.2-201ENST00000413542 321 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RBMY2UP-201ENST00000453474 324 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RPS4XP2-201ENST00000458402 793 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-991P-201ENST00000516168 107 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORD33.1-201ENST00000516213 88 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU4-60P-201ENST00000517239 135 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms