Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 Y_RNA.179-201ENST00000363844 90 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-770P-201ENST00000363929 105 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 U8.9-201ENST00000365667 134 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.556-201ENST00000384677 113 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 SNORD12B-201ENST00000410433 91 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 ELOCP20-201ENST00000422460 345 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC103975.1-201ENST00000482506 483 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 SNORA40.15-201ENST00000516884 107 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC079600.2-201ENST00000550076 130 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 MIR4319-201ENST00000577285 85 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 MIR4659A-201ENST00000580269 81 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 ZNF861P-201ENST00000588126 639 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC107871.2-201ENST00000612894 502 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AC005562.2-201ENST00000618264 111 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 MIR5739-201ENST00000619803 80 ntBASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.71□□□□□ -1.98
PTCHD3Q3KNS1 AL355596.1-201ENST00000565399 3996 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 MIR26A1-201ENST00000362205 77 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-793P-201ENST00000384233 104 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 MIR218-1-201ENST00000384999 110 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 SNORA26.7-201ENST00000391288 122 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.595-201ENST00000410403 105 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-1001P-201ENST00000411265 100 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 UBBP3-201ENST00000445497 241 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 AC023141.11-201ENST00000508864 202 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 AC074133.1-201ENST00000515696 183 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 SNORA9.3-201ENST00000516383 129 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.683-201ENST00000516508 93 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-344P-201ENST00000516635 111 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-586P-201ENST00000517265 104 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 AC018630.3-201ENST00000542637 96 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 MIR3605-201ENST00000583214 100 ntBASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTCHD3Q3KNS1 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 RNA5SP361-201ENST00000362686 118 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 SNORD56.5-201ENST00000364281 72 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 SET-203ENST00000372688 801 ntTSL 2 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 MIR95-201ENST00000385072 81 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 SNORD88.1-201ENST00000408684 91 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-130P-201ENST00000411112 103 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 EEF1B2P7-201ENST00000451177 676 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 PCNPP5-201ENST00000452246 481 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 CYP2C59P-201ENST00000457790 269 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 HSPE1P18-201ENST00000517602 280 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 MIR4672-201ENST00000583126 81 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 RPL12P50-201ENST00000603116 116 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 U4.1-201ENST00000620349 87 ntBASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
PTCHD3Q3KNS1 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 MTND5P35-201ENST00000557537 1720 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 Z82209.1-201ENST00000422141 2135 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 RNA5SP240-201ENST00000365355 128 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 Y_RNA.452-201ENST00000384202 108 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AL513477.1-202ENST00000417061 214 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC027124.2-201ENST00000428249 105 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC010095.1-201ENST00000443543 144 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 RPL39P40-201ENST00000445481 146 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC009237.7-201ENST00000447357 229 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC025465.3-201ENST00000510570 311 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 RNU2-44P-201ENST00000516795 194 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC004817.2-201ENST00000561794 651 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC233702.2-202ENST00000562547 291 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 MIR4503-201ENST00000582187 83 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC130454.1-201ENST00000622948 401 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AC090517.3-201ENST00000625170 141 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.68□□□□□ -1.98
PTCHD3Q3KNS1 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-238P-201ENST00000363313 106 ntBASIC2.67□□□□□ -1.98
PTCHD3Q3KNS1 RNU6-461P-201ENST00000364195 107 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 202.9 ms