Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MTCO3P38-201ENST00000468910 766 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC021146.2-201ENST00000504736 556 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC108078.1-201ENST00000508073 725 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC097473.1-201ENST00000508142 408 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC010486.3-201ENST00000511602 785 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 SNORA14.1-201ENST00000516113 141 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 RNU6-1038P-201ENST00000516516 104 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 SNORA31.17-201ENST00000516953 127 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC026407.1-201ENST00000518369 204 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC090517.1-201ENST00000569307 266 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 MIR3683-201ENST00000580847 82 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC009541.1-201ENST00000438279 2662 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 Y_RNA.77-201ENST00000362962 107 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC43Q96MW1 MIR30A-201ENST00000385092 71 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 RN7SKP101-201ENST00000411376 320 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 CDK8P2-201ENST00000415020 547 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 MTCO3P46-201ENST00000425787 232 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 RPL31P3-201ENST00000458430 332 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 RNU6-1037P-201ENST00000459571 107 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC43Q96MW1 AC079140.3-201ENST00000511111 550 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.83□□□□□ -2.12
CCDC43Q96MW1 CBX3P4-201ENST00000538909 354 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 HSBP1P1-201ENST00000555205 166 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC43Q96MW1 MIR5094-201ENST00000578766 85 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 AC009509.4-201ENST00000619202 509 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 AC090582.1-201ENST00000636321 199 ntBASIC1.83□□□□□ -2.12
CCDC43Q96MW1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC43Q96MW1 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC43Q96MW1 MIR126-201ENST00000362291 85 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 RNU1-17P-201ENST00000363022 152 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 SNORD31B-201ENST00000364977 69 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 SNORD37.1-201ENST00000390968 65 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 RNU4-55P-201ENST00000410731 137 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC43Q96MW1 MTCO2P16-201ENST00000436962 677 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 SNORA40.12-201ENST00000516329 111 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 RNU6-612P-201ENST00000516909 102 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 SNORA44.1-201ENST00000517031 108 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 RNU6-323P-201ENST00000521915 107 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 SNORD53B-201ENST00000577887 78 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 MIR4285-201ENST00000581001 85 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC43Q96MW1 MIR3124-201ENST00000582636 67 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 AC016925.2-201ENST00000605108 242 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 AC009994.1-201ENST00000606889 253 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 AC064807.4-201ENST00000607201 407 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 AC005520.5-201ENST00000613926 164 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.82□□□□□ -2.12
CCDC43Q96MW1 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC43Q96MW1 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.82□□□□□ -2.12
CCDC43Q96MW1 MIR424-201ENST00000362227 98 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 RNA5SP99-201ENST00000364020 114 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 Y_RNA.582-201ENST00000391023 95 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 RNU6-1093P-201ENST00000391194 107 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
CCDC43Q96MW1 DEFB108C-201ENST00000400154 252 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 AL513185.2-201ENST00000425543 193 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC43Q96MW1 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC43Q96MW1 RPS23P5-201ENST00000495419 428 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC43Q96MW1 RNU6-189P-201ENST00000516120 101 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC43Q96MW1 BX248123.2-201ENST00000606318 124 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 AC064836.2-201ENST00000609491 462 ntBASIC1.81□□□□□ -2.12
CCDC43Q96MW1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 RNU6-112P-201ENST00000363599 104 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 RNU6-482P-201ENST00000391068 107 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 MIR934-201ENST00000401241 83 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 snoU13.6-201ENST00000458785 104 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AC091133.4-201ENST00000511142 308 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 RNA5SP401-201ENST00000515920 127 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AP005597.4-201ENST00000526762 229 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 MIR3198-2-201ENST00000577868 80 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 RN7SKP299-201ENST00000606679 301 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 AC139792.3-201ENST00000623525 224 ntBASIC1.8□□□□□ -2.12
CCDC43Q96MW1 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC43Q96MW1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CCDC43Q96MW1 RNU6-661P-201ENST00000362409 107 ntBASIC1.79□□□□□ -2.12
CCDC43Q96MW1 RNU1-76P-201ENST00000362903 159 ntBASIC1.79□□□□□ -2.12
CCDC43Q96MW1 Y_RNA.409-201ENST00000383990 98 ntBASIC1.79□□□□□ -2.12
CCDC43Q96MW1 RNU6-1026P-201ENST00000384465 108 ntBASIC1.79□□□□□ -2.12
CCDC43Q96MW1 AL663109.1-201ENST00000411498 844 ntBASIC1.79□□□□□ -2.12
CCDC43Q96MW1 RPL21P111-201ENST00000418453 477 ntBASIC1.79□□□□□ -2.12
CCDC43Q96MW1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC43Q96MW1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 328.4 ms