Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 Z82210.1-201ENST00000440037 231 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AL078601.1-201ENST00000444542 271 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RPL31P13-201ENST00000484151 370 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RAC1P5-201ENST00000512182 576 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC023141.12-201ENST00000512399 199 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RN7SKP164-201ENST00000516138 266 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 NDUFB9P3-201ENST00000521269 501 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 UBL5P4-201ENST00000562584 236 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SNORD84-203ENST00000584275 78 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC048347.1-201ENST00000624621 427 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL365440.1-201ENST00000436135 2167 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNA5SP374-201ENST00000362939 125 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU1-33P-201ENST00000364249 162 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNA5SP42-201ENST00000364278 115 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 Y_RNA.245-201ENST00000364493 95 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC017083.1-201ENST00000428093 483 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL121594.1-201ENST00000475906 575 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL049874.1-201ENST00000489560 388 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 Y_RNA.709-201ENST00000516952 92 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RN7SKP234-201ENST00000517173 224 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC107918.3-201ENST00000533272 382 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC016256.1-201ENST00000547971 354 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR4716-201ENST00000579628 84 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR4425-201ENST00000580572 84 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR3145-201ENST00000580727 82 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR4744-201ENST00000581563 82 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR4435-1-201ENST00000582552 80 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC241585.2-209ENST00000638217 143 ntBASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 Y_RNA.337-201ENST00000365312 102 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-142P-201ENST00000384019 107 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR504-201ENST00000385065 83 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-578P-201ENST00000390980 103 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-381P-201ENST00000391259 108 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 Y_RNA.595-201ENST00000410403 105 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC092798.1-201ENST00000458542 409 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC139453.3-201ENST00000493276 369 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC100767.1-201ENST00000528178 123 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR4512-201ENST00000583257 77 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR6129-201ENST00000616087 109 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL353748.2-201ENST00000622148 471 ntBASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.76□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC090971.4-201ENST00000560291 1800 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-527P-201ENST00000363425 104 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 Y_RNA.172-201ENST00000363765 102 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU5F-3P-201ENST00000363767 117 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SNORA29-201ENST00000384183 140 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-1144P-201ENST00000384247 104 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR514A1-201ENST00000385133 98 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MTHFD2P2-201ENST00000407725 247 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL590399.6-201ENST00000446396 307 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC006026.2-201ENST00000457376 180 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC009127.3-201ENST00000570531 403 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR3658-201ENST00000636291 56 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AP000553.6-201ENST00000641242 118 ntBASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 U8.10-201ENST00000384260 133 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-146P-201ENST00000384602 108 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms