Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC008088.1-201ENST00000580993 280 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 MIR4713-201ENST00000582691 75 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC025811.1-201ENST00000604312 472 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC012493.3-201ENST00000604494 112 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC130454.1-201ENST00000622948 401 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AP000560.1-201ENST00000624150 1937 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 RNA5SP493-201ENST00000364115 91 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 SNORD114-6-201ENST00000364393 72 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC43Q96MW1 RNU6-517P-201ENST00000384362 110 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC43Q96MW1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC43Q96MW1 SNAP23P1-201ENST00000433229 246 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 PPP1R2P5-201ENST00000457256 603 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC132942.1-201ENST00000486753 483 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 RPS29P11-201ENST00000496507 171 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC108210.2-201ENST00000503681 201 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC43Q96MW1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC43Q96MW1 SNORA25.15-201ENST00000516487 89 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC069113.1-201ENST00000517763 267 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 GNAI2P1-201ENST00000541815 315 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 HIF1AP1-201ENST00000553642 175 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC109446.1-201ENST00000566172 220 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 AC022254.1-201ENST00000567857 235 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 Z99497.2-201ENST00000603634 310 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 RNU6-85P-201ENST00000605989 107 ntBASIC1.97□□□□□ -2.09
CCDC43Q96MW1 RNU4-56P-201ENST00000364700 142 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 RNU6-234P-201ENST00000365229 104 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 SNORA75-201ENST00000384158 137 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 SNORD116-8-201ENST00000384365 95 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 RNU6-160P-201ENST00000384591 107 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 HSPE1P21-201ENST00000438283 308 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 RNU6-956P-201ENST00000458868 103 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 RNU7-63P-201ENST00000459054 62 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 RNVU1-2-201ENST00000516326 135 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 MIR3923-201ENST00000579521 83 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 AL356157.2-201ENST00000605122 111 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 AP001596.2-201ENST00000608410 312 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 AL590240.4-201ENST00000616908 390 ntBASIC1.96□□□□□ -2.1
CCDC43Q96MW1 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
CCDC43Q96MW1 MTCYBP2-201ENST00000407745 171 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 RN7SKP61-201ENST00000410642 295 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC43Q96MW1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AL645568.3-201ENST00000433683 316 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 MTND1P26-201ENST00000440488 538 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AL035666.1-201ENST00000446195 348 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC098862.1-201ENST00000504991 413 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC091874.1-201ENST00000511402 339 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC010493.1-201ENST00000513479 292 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC43Q96MW1 MIR3169-201ENST00000578032 83 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 MIR3941-201ENST00000582572 103 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC012507.3-201ENST00000603556 477 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 MIR502-201ENST00000606349 86 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC103810.8-201ENST00000607347 118 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 U2.17-201ENST00000611454 95 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 MIR8081-201ENST00000611533 95 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 AC008147.4-201ENST00000617570 1204 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 Z69908.1-201ENST00000622603 247 ntBASIC1.95□□□□□ -2.1
CCDC43Q96MW1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC43Q96MW1 RNU6-996P-201ENST00000365438 107 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 SNORA48.1-201ENST00000390879 135 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 POLHP1-201ENST00000411806 470 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AL133396.1-201ENST00000432048 687 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC007677.1-201ENST00000445757 515 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 RNU7-180P-201ENST00000459240 63 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC087884.1-201ENST00000469738 328 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC024614.2-201ENST00000577584 372 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC119751.7-201ENST00000600494 245 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC078795.3-201ENST00000602913 472 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AL354950.2-201ENST00000617939 290 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC005609.4-201ENST00000625071 447 ntBASIC1.94□□□□□ -2.1
CCDC43Q96MW1 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC43Q96MW1 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC43Q96MW1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
CCDC43Q96MW1 AL354685.2-201ENST00000448218 1447 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC43Q96MW1 Y_RNA.332-201ENST00000365271 113 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 RNU5A-6P-201ENST00000384136 116 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 Y_RNA.504-201ENST00000384481 104 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 187.7 ms