Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 RNU6-266P-201ENST00000364225 107 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 RNU6-1141P-201ENST00000364520 107 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 RNU6-142P-201ENST00000384019 107 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 RNU6-903P-201ENST00000391270 109 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AL030996.1-201ENST00000411430 235 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AL590135.1-201ENST00000422215 156 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC019205.3-201ENST00000424573 156 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC244670.1-201ENST00000436879 112 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC016700.2-201ENST00000446011 156 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC015911.1-201ENST00000495111 156 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 Y_RNA.695-201ENST00000516715 107 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AK6P1-201ENST00000540219 478 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 MTATP6P3-201ENST00000581686 676 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC110760.3-201ENST00000598794 467 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 CYP2C61P-201ENST00000604072 290 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 U1.36-201ENST00000620684 176 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 AC084768.2-201ENST00000622736 221 ntBASIC2.02□□□□□ -2.09
CCDC43Q96MW1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC43Q96MW1 MTND4P14-201ENST00000435799 1354 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 SNORD32B-201ENST00000364460 84 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 RNU6-827P-201ENST00000365553 106 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC43Q96MW1 AL117339.3-201ENST00000418733 162 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 UBE2V1P4-201ENST00000425374 344 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 ARL2BPP4-201ENST00000506854 471 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 AK3P2-201ENST00000507976 429 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC43Q96MW1 AC107393.1-201ENST00000512403 346 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 SNORA31.16-201ENST00000516773 139 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 AC103996.1-201ENST00000555468 102 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 MTCO3P23-201ENST00000561363 289 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 MIR3136-201ENST00000583498 78 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.01□□□□□ -2.09
CCDC43Q96MW1 AC087752.4-201ENST00000605911 462 ntBASIC2.01□□□□□ -2.09
CCDC43Q96MW1 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC43Q96MW1 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
CCDC43Q96MW1 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2□□□□□ -2.09
CCDC43Q96MW1 Y_RNA.159-201ENST00000363674 87 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 MIR9-3-201ENST00000385084 90 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 RPS29P13-201ENST00000402041 169 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2□□□□□ -2.09
CCDC43Q96MW1 HMGN2P18-201ENST00000450680 270 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AL356010.1-201ENST00000456364 102 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AC079140.5-201ENST00000507882 310 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AL137161.1-201ENST00000532231 390 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AC007834.2-201ENST00000536310 343 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 HSPE1P4-201ENST00000550617 308 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2□□□□□ -2.09
CCDC43Q96MW1 MTND3P12-201ENST00000559068 328 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2□□□□□ -2.09
CCDC43Q96MW1 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2□□□□□ -2.09
CCDC43Q96MW1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2□□□□□ -2.09
CCDC43Q96MW1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
CCDC43Q96MW1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC43Q96MW1 RNU6-552P-201ENST00000362869 119 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 SNORD32A-201ENST00000364805 84 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 Y_RNA.399-201ENST00000383955 105 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC43Q96MW1 EIF4EP2-201ENST00000422816 654 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 MTCYBP8-201ENST00000422855 651 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 CETN4P-201ENST00000432407 469 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC43Q96MW1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC43Q96MW1 RNA5SP490-201ENST00000517141 136 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 COPS8P3-201ENST00000526024 482 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 DEFB122-202ENST00000569013 197 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 MIR4419B-201ENST00000577260 68 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 MIR3618-201ENST00000580330 88 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 MIR5583-1-201ENST00000580941 59 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 VN1R107P-201ENST00000601784 209 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AL158063.1-201ENST00000615349 536 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AC078883.4-201ENST00000623218 367 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 AC245060.5-201ENST00000610778 3293 ntBASIC1.99□□□□□ -2.09
CCDC43Q96MW1 RNU6-23P-201ENST00000363283 107 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 RNU6-26P-201ENST00000383985 107 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 SNORA26.9-201ENST00000391322 122 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC068050.1-201ENST00000394891 380 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AL357139.1-201ENST00000407792 426 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC43Q96MW1 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC078809.1-201ENST00000427601 140 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AL591806.2-201ENST00000433122 173 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC43Q96MW1 RNU6-333P-201ENST00000459117 107 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 RNU7-167P-201ENST00000459160 62 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 HMGB3P17-201ENST00000504195 649 ntBASIC1.98□□□□□ -2.09
CCDC43Q96MW1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.98□□□□□ -2.09
CCDC43Q96MW1 OSBPL9P5-201ENST00000542581 171 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 228.5 ms