Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HMGB1P37-201ENST00000439613 609 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 U8.18-201ENST00000459285 133 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RPS26P21-201ENST00000475397 348 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU4ATAC6P-201ENST00000516592 126 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-612P-201ENST00000516909 102 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-840P-201ENST00000517275 65 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-37P-201ENST00000362692 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 U3.6-201ENST00000363622 211 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-11P-201ENST00000364234 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-7-201ENST00000364784 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Y_RNA.286-201ENST00000364813 102 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-8-201ENST00000365467 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-25P-201ENST00000383873 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-1-201ENST00000383898 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-36P-201ENST00000384172 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-4P-201ENST00000384205 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-5P-201ENST00000384238 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-3P-201ENST00000384314 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-16P-201ENST00000384385 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-1289P-201ENST00000384431 106 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-15P-201ENST00000384534 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-2-201ENST00000384627 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-29P-201ENST00000384637 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-9-201ENST00000384776 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MT-TC-201ENST00000387405 66 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RPL7AP73-201ENST00000413490 353 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AP001025.1-201ENST00000486139 332 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RPS26P15-201ENST00000488067 348 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 TRBV12-2-201ENST00000489763 344 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC091959.1-201ENST00000495857 238 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORA72.7-201ENST00000516349 94 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORA27.4-201ENST00000516650 95 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-6P-201ENST00000606623 107 ntBASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC100821.1-201ENST00000523153 2479 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Y_RNA.43-201ENST00000362670 111 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Y_RNA.262-201ENST00000364641 102 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU4-30P-201ENST00000410245 143 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC092447.6-201ENST00000414578 210 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 COTL1P1-201ENST00000422309 375 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PPP1R11P2-201ENST00000423543 382 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL160314.1-201ENST00000490836 438 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 snoU109.6-201ENST00000516831 118 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC008011.1-201ENST00000545989 227 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AK6P2-201ENST00000549020 471 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 TRAV37-201ENST00000553906 342 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR8058-201ENST00000615737 89 ntBASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC5.13□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Y_RNA.238-201ENST00000364441 102 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-1325P-201ENST00000364905 105 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR135A2-201ENST00000384854 100 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-257P-201ENST00000410238 98 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL139247.1-201ENST00000422768 325 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 TOMM20P4-201ENST00000427861 435 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC090774.1-201ENST00000435925 246 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RPS20P22-201ENST00000473700 357 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC010409.1-201ENST00000487382 476 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC022493.1-201ENST00000492984 337 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC104619.4-201ENST00000510773 249 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-426P-201ENST00000516464 97 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU7-110P-201ENST00000516891 62 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR4769-201ENST00000584126 77 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC067852.4-201ENST00000590314 478 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR8057-201ENST00000620957 69 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC233981.2-201ENST00000611524 1614 ntBASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC5.12□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 245.3 ms