Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC053481.4-201ENST00000583164 216 ntBASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 AL022345.2-201ENST00000606307 135 ntBASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 SNORD115-40-201ENST00000606510 82 ntBASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 RNA5SP196-201ENST00000625967 102 ntBASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC61Q9Y6R9 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
CCDC61Q9Y6R9 MAPK10-304ENST00000641341 3984 ntBASIC6.21□□□□□ -1.41
CCDC61Q9Y6R9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC61Q9Y6R9 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC6.21□□□□□ -1.41
CCDC61Q9Y6R9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 RNU1-132P-201ENST00000364300 164 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 Z98749.2-208ENST00000381646 500 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 RN7SKP27-201ENST00000410684 333 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 AC079780.1-201ENST00000428259 207 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 CKS1BP5-201ENST00000434172 273 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 TRAV8-5-201ENST00000537369 341 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 AC025754.2-201ENST00000606491 432 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-94P-201ENST00000607728 107 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 MIR6891-201ENST00000618788 93 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 MIR3202-2-201ENST00000635980 79 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 MARK2P15-201ENST00000432204 2186 ntBASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC61Q9Y6R9 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-1134P-201ENST00000365156 101 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 SNORA5.1-201ENST00000384275 131 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 RPS26P8-201ENST00000393490 348 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 AC126124.2-201ENST00000413542 321 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 AL135786.1-201ENST00000415892 214 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 AC117454.1-201ENST00000491120 168 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 MIR1254-2-201ENST00000579553 63 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 MIR492-201ENST00000638676 116 ntBASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC61Q9Y6R9 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 UBBP2-201ENST00000376781 231 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-1296P-201ENST00000383879 107 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-146P-201ENST00000384602 108 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 Y_RNA.549-201ENST00000384657 102 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 AC090515.1-201ENST00000465295 476 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 RPS29P2-201ENST00000479278 136 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP249-201ENST00000516127 99 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 RNU7-115P-201ENST00000516433 55 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-703P-201ENST00000516946 107 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 AL162713.1-201ENST00000604480 262 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 AC113403.1-201ENST00000604910 193 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 uc_338.13-201ENST00000618243 179 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 AL590808.1-201ENST00000618696 141 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 AC104623.2-202ENST00000623477 4002 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC61Q9Y6R9 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 DHX9P1-201ENST00000436565 3076 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 Y_RNA.323-201ENST00000365157 109 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 SNORA11F-201ENST00000408237 128 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 MIR1278-201ENST00000408753 81 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP317-201ENST00000410176 116 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP311-201ENST00000411290 116 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 AC019205.3-201ENST00000424573 156 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 AL590383.1-201ENST00000428602 75 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 235.5 ms