Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC017083.1-201ENST00000428093 483 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC079354.2-201ENST00000453523 154 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.638-201ENST00000459374 113 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 U8.21-201ENST00000459536 136 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 HMGN1P11-201ENST00000508668 303 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC023141.12-201ENST00000512399 199 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 RNU1-86P-201ENST00000516108 154 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.679-201ENST00000516416 91 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 RNU1-107P-201ENST00000516617 154 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 RNU2-31P-201ENST00000516954 155 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 MIR2355-201ENST00000517199 87 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 CASP1P1-201ENST00000526345 212 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 MIR4659A-201ENST00000580269 81 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AL590392.1-201ENST00000604960 446 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 AC083809.1-201ENST00000615051 472 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 MIR6500-201ENST00000622700 86 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 RNU6-1130P-201ENST00000365434 107 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.353-201ENST00000365440 108 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 SNORD116-18-201ENST00000383961 92 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.405-201ENST00000383979 100 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.451-201ENST00000384200 100 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.524-201ENST00000384564 100 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.534-201ENST00000384599 112 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 RNU6-1179P-201ENST00000384667 107 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.561-201ENST00000384694 100 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.568-201ENST00000384742 113 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 MIR199A2-201ENST00000385289 110 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 SNORD78.2-201ENST00000391076 69 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AC092447.6-201ENST00000414578 210 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 MTCO1P5-201ENST00000433573 344 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AL162151.2-201ENST00000448875 158 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AC078918.1-201ENST00000498515 228 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AP004371.1-201ENST00000525240 214 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 H3F3AP1-201ENST00000559984 334 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AC104581.2-201ENST00000572227 430 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 MTND1P7-201ENST00000632801 297 ntBASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CCDC39Q9UFE4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 SPRR2C-201ENST00000290702 219 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.275-201ENST00000364726 110 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC068538.1-201ENST00000376856 336 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.435-201ENST00000384095 112 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 SNORD63-201ENST00000384262 68 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 RNU1-13P-201ENST00000384499 162 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 RNU6-658P-201ENST00000384606 106 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.580-201ENST00000391004 95 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.586-201ENST00000391146 98 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AL035461.1-201ENST00000421490 332 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AL162725.1-201ENST00000435405 301 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC005921.1-201ENST00000510589 286 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 RNY3P16-201ENST00000516338 101 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP309-201ENST00000516670 106 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC008489.1-201ENST00000524271 483 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AP004242.1-201ENST00000533701 349 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AL121603.1-201ENST00000553815 142 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 OR4H12P-201ENST00000556269 907 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 FAM60BP-201ENST00000578364 658 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 AC004852.3-201ENST00000614131 326 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 RMST_4.1-201ENST00000616886 107 ntBASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC39Q9UFE4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 RNU6-283P-201ENST00000364788 107 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.286-201ENST00000364813 102 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP189-201ENST00000364920 115 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 RNU6-1181P-201ENST00000384191 106 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 246.8 ms