Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TBCAP1-201ENST00000436520 327 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 RPL23AP14-201ENST00000468281 468 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 TRBV12-2-201ENST00000489763 344 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 AC103783.1-201ENST00000520506 373 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 MIR548AC-201ENST00000585049 88 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 BDH2P1-201ENST00000602288 736 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 AC009318.2-201ENST00000610917 651 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.4□□□□□ -1.7
CCDC39Q9UFE4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.4□□□□□ -1.7
CCDC39Q9UFE4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC39Q9UFE4 RNU6-1249P-201ENST00000363237 111 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 RNU6-215P-201ENST00000365169 102 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.504-201ENST00000384481 104 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AL353621.1-201ENST00000418219 243 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 snoU109.4-201ENST00000458953 143 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AP001324.2-201ENST00000461163 319 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 SNORA31.3-201ENST00000516029 96 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 RNU6-914P-201ENST00000516749 109 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AC025755.1-201ENST00000521306 278 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 YPEL5P3-201ENST00000547227 352 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 MIR4425-201ENST00000580572 84 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 SNRPGP15-201ENST00000600149 222 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 AC091895.1-201ENST00000624494 256 ntBASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC39Q9UFE4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RBBP8P1-201ENST00000449447 1844 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP97-201ENST00000365006 84 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RPL26P6-201ENST00000440913 438 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 SNRPGP5-201ENST00000456003 220 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RN7SKP210-201ENST00000459176 261 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RNU7-87P-201ENST00000459343 62 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RNU6-1219P-201ENST00000516143 112 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RNU6-1012P-201ENST00000516606 109 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RN7SKP209-201ENST00000516888 304 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RN7SKP258-201ENST00000517151 304 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 AC090877.1-201ENST00000561418 344 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 MIR4738-201ENST00000579134 87 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 MIR4282-201ENST00000583613 67 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 MIR8076-201ENST00000611401 83 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 MIR378J-201ENST00000611988 109 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 MIR6130-201ENST00000619419 109 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 MAPK10-372ENST00000641954 3413 ntBASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC39Q9UFE4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNU6-335P-201ENST00000364563 113 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNU6-923P-201ENST00000364753 107 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.343-201ENST00000365354 112 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNU6-326P-201ENST00000365480 107 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNU6-44P-201ENST00000384045 107 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 SNORA12.2-201ENST00000391040 156 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNU6-131P-201ENST00000391144 107 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.590-201ENST00000410140 107 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP317-201ENST00000410176 116 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 SNORA57.3-201ENST00000411095 141 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP311-201ENST00000411290 116 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC063979.1-201ENST00000415539 377 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 TPT1P12-201ENST00000448968 492 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 ANP32BP2-201ENST00000454525 545 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 U8.22-201ENST00000459141 133 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 HMGB1P25-201ENST00000468402 607 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC140059.1-201ENST00000489238 361 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP315-201ENST00000516340 116 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 RNA5SP312-201ENST00000517068 116 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC009314.1-201ENST00000603871 304 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC011476.5-201ENST00000615594 130 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 AC106871.1-201ENST00000568324 3102 ntBASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC39Q9UFE4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 Y_RNA.441-201ENST00000384123 112 ntBASIC4.37□□□□□ -1.71
CCDC39Q9UFE4 RNU2-61P-201ENST00000411069 191 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 203.5 ms