Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 SNORA31.25-201ENST00000517242 134 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC43Q96MW1 MIR5694-201ENST00000581190 76 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC025165.5-201ENST00000602802 578 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC073410.2-201ENST00000603240 332 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC009159.2-201ENST00000617603 606 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC007494.3-201ENST00000624660 743 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC019226.2-201ENST00000625973 424 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC110994.2-201ENST00000635481 492 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 SNORD116-20-201ENST00000384529 92 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AL591034.2-201ENST00000402839 359 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 RPS3AP3-201ENST00000411933 242 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 RPL21P90-201ENST00000415692 466 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC005005.2-201ENST00000420779 380 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AL360271.2-201ENST00000447710 161 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AL133217.1-201ENST00000450980 425 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC109446.2-201ENST00000567872 497 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 MIR4648-201ENST00000580107 72 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 AC008121.3-201ENST00000618726 433 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.38□□□□□ -2.03
CCDC43Q96MW1 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC43Q96MW1 RNU6-1010P-201ENST00000362757 107 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RNU6-179P-201ENST00000363350 107 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RNU1-23P-201ENST00000363361 144 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 MIR186-201ENST00000384988 86 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 MTND1P23-201ENST00000416931 372 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 CALM2P2-201ENST00000428512 440 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RN7SL429P-201ENST00000479090 223 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RN7SL489P-201ENST00000486185 223 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RN7SL327P-201ENST00000488659 223 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC116562.3-201ENST00000506136 177 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC091965.2-201ENST00000512324 613 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RNU2-53P-201ENST00000516257 147 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 Vault.3-201ENST00000516676 95 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC068587.5-201ENST00000528506 175 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 MIR3915-201ENST00000578518 97 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC087683.2-201ENST00000611384 326 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC008250.2-201ENST00000615261 205 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 uc_338.15-201ENST00000615470 191 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RN7SL853P-201ENST00000617250 223 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AL603839.4-201ENST00000624658 1005 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 AP000553.5-201ENST00000641933 54 ntBASIC2.37□□□□□ -2.03
CCDC43Q96MW1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC43Q96MW1 RNU6-529P-201ENST00000363383 104 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 SNORA25B-201ENST00000365507 128 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 SNORA51.11-201ENST00000384442 131 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AL355497.1-201ENST00000406262 551 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 RNU6-195P-201ENST00000411352 109 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 EEF1A1P40-201ENST00000412883 573 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 MORF4L1P6-201ENST00000418771 268 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AL365203.2-201ENST00000423444 196 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC073614.1-201ENST00000438690 650 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC055731.1-201ENST00000474387 401 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AP001025.1-201ENST00000486139 332 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC018868.1-201ENST00000491307 315 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 SNORA48.11-201ENST00000517015 89 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC233702.2-202ENST00000562547 291 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AC108479.2-201ENST00000617314 601 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 AL359740.1-201ENST00000624340 592 ntBASIC2.36□□□□□ -2.03
CCDC43Q96MW1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC43Q96MW1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC43Q96MW1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
CCDC43Q96MW1 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
CCDC43Q96MW1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC43Q96MW1 SNORA6-201ENST00000384033 151 ntBASIC2.35□□□□□ -2.03
CCDC43Q96MW1 SNORA64-201ENST00000384674 134 ntBASIC2.35□□□□□ -2.03
CCDC43Q96MW1 CYCSP46-201ENST00000423569 204 ntBASIC2.35□□□□□ -2.03
CCDC43Q96MW1 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC43Q96MW1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC43Q96MW1 ISCA1P6-201ENST00000427740 390 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 188.8 ms