Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC099677.1-201ENST00000420575 175 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC008267.6-201ENST00000441664 139 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC025518.1-201ENST00000479856 347 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL29P14-201ENST00000495837 428 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC074133.1-201ENST00000515696 183 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 HIGD1AP3-201ENST00000515857 278 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU2-31P-201ENST00000516954 155 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNA5SP179-201ENST00000517284 121 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 CASP1P1-201ENST00000526345 212 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 NF1P5-201ENST00000588287 448 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.273-201ENST00000364703 102 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SNORD63-201ENST00000384262 68 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR578-201ENST00000384828 96 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.580-201ENST00000391004 95 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SNORA3C-201ENST00000408792 125 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNA5SP39-201ENST00000411245 120 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL354710.1-201ENST00000453641 246 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC025755.1-201ENST00000521306 278 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC120057.2-201ENST00000571520 271 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 FAM60BP-201ENST00000578364 658 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR4282-201ENST00000583613 67 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC004852.3-201ENST00000614131 326 ntBASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.272-201ENST00000364696 102 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.353-201ENST00000365440 108 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ENSAP1-201ENST00000392855 326 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 CYCSP33-201ENST00000414485 327 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL353621.1-201ENST00000418219 243 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL691449.1-201ENST00000426570 421 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL162725.1-201ENST00000435405 301 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 CYCSP35-201ENST00000451978 304 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU7-87P-201ENST00000459343 62 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL37P6-202ENST00000464216 403 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL32P34-201ENST00000486380 400 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL30P1-201ENST00000488676 339 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC140059.1-201ENST00000489238 361 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-1012P-201ENST00000516606 109 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SNRPGP16-201ENST00000533275 226 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 GNRHR2P1-201ENST00000555315 631 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC009318.2-201ENST00000610917 651 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNORD116-18-201ENST00000383961 92 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.568-201ENST00000384742 113 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL031121.1-201ENST00000406553 254 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU2-21P-201ENST00000410368 188 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC004552.1-201ENST00000419089 348 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL035461.1-201ENST00000421490 332 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL158156.1-201ENST00000422509 473 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 HMGB1P27-201ENST00000431429 603 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPS26P3-201ENST00000470205 348 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC090543.2-201ENST00000483963 348 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC004057.1-201ENST00000485827 348 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNA5SP208-201ENST00000516156 78 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RN7SKP258-201ENST00000517151 304 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 H3F3AP1-201ENST00000559984 334 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC023824.2-201ENST00000566185 400 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC104581.2-201ENST00000572227 430 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL591424.2-201ENST00000617023 128 ntBASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 184.8 ms