Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR190B-201ENST00000401119 79 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SNORA57.3-201ENST00000411095 141 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-607P-201ENST00000411283 108 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL23AP46-201ENST00000438548 490 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL513043.1-201ENST00000439124 535 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL9P9-202ENST00000466501 579 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL590705.4-201ENST00000532209 134 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC092079.1-201ENST00000558620 1985 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.358-201ENST00000365491 99 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.504-201ENST00000384481 104 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-918P-201ENST00000391219 106 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL079342.1-201ENST00000401460 267 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL31P2-201ENST00000413849 377 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 OOSP1P1-201ENST00000423265 274 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RN7SKP210-201ENST00000459176 261 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 U8.21-201ENST00000459536 136 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AP001324.2-201ENST00000461163 319 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.679-201ENST00000516416 91 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL358913.1-201ENST00000554342 121 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL139395.1-201ENST00000603662 160 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL034351.1-201ENST00000605288 668 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR15A-201ENST00000607334 83 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR7111-201ENST00000619751 72 ntBASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.33□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 BTBD10P1-201ENST00000549824 1352 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-288P-201ENST00000363690 104 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SNORD74.4-201ENST00000364129 80 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.324-201ENST00000365165 102 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-326P-201ENST00000365480 107 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-102P-201ENST00000384485 104 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.590-201ENST00000410140 107 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL26P6-201ENST00000440913 438 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC022431.1-201ENST00000450941 438 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 snoU109.4-201ENST00000458953 143 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC007458.1-201ENST00000542812 373 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR3945-201ENST00000581853 98 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL365222.1-201ENST00000614661 98 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL354798.1-201ENST00000622505 329 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR6500-201ENST00000622700 86 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL596275.2-206ENST00000641957 626 ntBASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.32□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-215P-201ENST00000365169 102 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-937P-201ENST00000384325 106 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU6-14P-201ENST00000384630 106 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR93-201ENST00000385024 80 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNU2-61P-201ENST00000411069 191 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RANP8-201ENST00000444720 713 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AL360271.2-201ENST00000447710 161 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 BX276092.4-201ENST00000452056 248 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 HSPE1P25-201ENST00000455484 251 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNA5SP246-201ENST00000458909 119 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RPL30P11-201ENST00000495304 339 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RNA5SP154-201ENST00000516193 111 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR548AC-201ENST00000585049 88 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC005255.1-201ENST00000593748 216 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC091167.4-201ENST00000605079 184 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC015813.4-201ENST00000610469 179 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR8076-201ENST00000611401 83 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 AC240442.1-201ENST00000616055 283 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MIR6130-201ENST00000619419 109 ntBASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 RBBP8P1-201ENST00000449447 1844 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.435-201ENST00000384095 112 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.441-201ENST00000384123 112 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 SNORD78.2-201ENST00000391076 69 ntBASIC5.3□□□□□ -1.56
SENP3-EIF4A1A0A087X0R7 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 238.3 ms