Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AL356320.1-201ENST00000429616 163 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AL353706.1-201ENST00000436728 494 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 UBE2D3P4-201ENST00000441973 436 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC073901.1-201ENST00000462471 408 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 MRPL42P6-201ENST00000486397 371 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC140059.1-201ENST00000489238 361 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC022878.1-201ENST00000530684 149 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC135279.1-201ENST00000543493 504 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC091544.4-201ENST00000555268 342 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC092325.1-201ENST00000566449 554 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC090616.2-202ENST00000584248 222 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 RPS15AP11-201ENST00000594193 385 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AL022161.1-201ENST00000604390 213 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 ZNF720P1-201ENST00000562403 1939 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AL139276.1-201ENST00000311910 1001 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC138393.1-203ENST00000327086 343 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 RNU6-858P-201ENST00000362436 107 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 Y_RNA.560-201ENST00000384689 102 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 MIR221-201ENST00000385135 110 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 RNA5SP425-201ENST00000410336 112 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 RN7SKP158-201ENST00000410453 326 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 NPM1P11-201ENST00000417106 855 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 USP9YP15-201ENST00000442391 422 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC124916.1-201ENST00000444020 547 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC011753.1-201ENST00000451001 220 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 RNU7-125P-201ENST00000458760 62 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC018437.1-201ENST00000492214 406 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC022493.1-201ENST00000492984 337 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC005178.1-201ENST00000508392 440 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 RN7SKP287-201ENST00000516546 266 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC009127.3-201ENST00000570531 403 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC093424.1-201ENST00000604999 338 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 AC087045.1-201ENST00000605856 382 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 MIR5739-201ENST00000619803 80 ntBASIC2.51□□□□□ -2.01
CCDC43Q96MW1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC43Q96MW1 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 MIRLET7G-201ENST00000362280 84 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 RNU1-72P-201ENST00000362976 153 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 RNA5SP126-201ENST00000365092 109 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 RNU6-301P-201ENST00000384277 107 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 RNU1-148P-201ENST00000384472 162 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 KATNBL1P6-201ENST00000453433 915 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 snoU109.2-201ENST00000459316 135 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 CKS1BP2-201ENST00000497342 240 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 ADI1P3-201ENST00000549509 470 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 RPS3AP23-202ENST00000574601 686 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 DEFB131E-202ENST00000602581 683 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 WISP1-OT1-201ENST00000602893 642 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AL353778.1-201ENST00000603149 408 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AL022154.1-201ENST00000604698 785 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AL355297.2-201ENST00000604792 129 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC068276.1-201ENST00000605793 379 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC012640.5-201ENST00000623897 319 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 AC099654.13-201ENST00000639774 207 ntBASIC2.5□□□□□ -2.01
CCDC43Q96MW1 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC43Q96MW1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC43Q96MW1 CKAP2P1-201ENST00000555477 2049 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC43Q96MW1 OR56A5-201ENST00000340110 738 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 SNORD3E-201ENST00000362899 217 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 U8.2-201ENST00000363156 134 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 AL591416.1-201ENST00000404015 867 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 RNU2-63P-201ENST00000410792 194 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 Y_RNA.623-201ENST00000411128 95 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC43Q96MW1 AL365338.1-201ENST00000422282 858 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC43Q96MW1 RPL7P34-201ENST00000433316 712 ntBASIC2.49□□□□□ -2.01
CCDC43Q96MW1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC43Q96MW1 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms