Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC016065.2-201ENST00000514530 444 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RNA5SP519-201ENST00000516480 119 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 SNORA25.14-201ENST00000516481 132 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 TRAV8-5-201ENST00000537369 341 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 CBX3P4-201ENST00000538909 354 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 RPS29P30-201ENST00000600975 111 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 BX284668.6-201ENST00000606899 438 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 AC004825.2-201ENST00000616634 455 ntBASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC39Q9UFE4 HSPA8P1-201ENST00000425843 1833 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.122-201ENST00000363331 96 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RNU6-946P-201ENST00000383878 107 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 MIR215-201ENST00000384858 110 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 MIR937-201ENST00000401271 86 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RPS4XP7-201ENST00000406274 780 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RNU6-174P-201ENST00000410406 106 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RNU6-130P-201ENST00000411112 103 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RHEBP3-201ENST00000411920 351 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC011276.1-201ENST00000469688 323 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RN7SL691P-201ENST00000494487 301 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC093840.1-201ENST00000511599 336 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC067942.3-201ENST00000512025 362 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC005798.1-201ENST00000513715 387 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 RNA5SP49-201ENST00000516450 115 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC034114.1-201ENST00000520293 285 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC087441.2-201ENST00000529141 262 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC009643.1-201ENST00000532030 391 ntBASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC39Q9UFE4 MAPK10-373ENST00000641983 6772 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AC138393.1-203ENST00000327086 343 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 RNY1P16-201ENST00000363063 111 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 Y_RNA.170-201ENST00000363746 110 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 RNA5SP509-201ENST00000364577 119 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 SMIM11P1-201ENST00000369586 178 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 RNU6-1027P-201ENST00000383998 107 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 MIR124-3-201ENST00000384866 87 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 MIR625-201ENST00000385047 85 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 MIR613-201ENST00000385248 95 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 RNA5SP111-201ENST00000411386 101 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AL732292.1-201ENST00000426692 226 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 RPS6P12-201ENST00000432491 726 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AC009963.2-201ENST00000453431 138 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 DEFB108E-201ENST00000524692 240 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 CBX3P8-201ENST00000532412 525 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AP002392.1-201ENST00000537692 208 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 TVP23BP1-201ENST00000557500 617 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 MIR5096-201ENST00000583713 70 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 ELOCP5-201ENST00000604924 333 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AC110741.2-201ENST00000605278 268 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 AC006023.2-201ENST00000609916 167 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 SAGE4P-201ENST00000442271 3381 ntBASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC39Q9UFE4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RNU6-682P-201ENST00000363843 106 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RNU6-596P-201ENST00000365395 98 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 SNORD82-201ENST00000365530 70 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RNU6-356P-201ENST00000384140 107 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 MIR1250-201ENST00000408098 113 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RPL31P2-201ENST00000413849 377 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 EZH2P1-201ENST00000431167 291 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RPEP5-201ENST00000441137 268 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 255.1 ms