Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 Z99571.1-201ENST00000636677 394 ntBASIC2.72□□□□□ -1.97
CCDC43Q96MW1 ZNF271P-202ENST00000465539 1970 ntBASIC2.72□□□□□ -1.97
CCDC43Q96MW1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC43Q96MW1 RNU4-82P-201ENST00000362443 140 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 RNA5SP393-201ENST00000363423 117 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 RNU6-511P-201ENST00000363496 107 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 SNORA41-201ENST00000384675 132 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 RNU6-19P-201ENST00000384718 107 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 MICF-203ENST00000432679 129 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 FABP5P14-201ENST00000437273 393 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AF131216.2-201ENST00000512316 564 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AC109329.2-201ENST00000519658 482 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AC010186.2-204ENST00000537668 439 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 ZNF519P3-201ENST00000557158 1032 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 ROCK1P1-201ENST00000573767 549 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 MIR4513-201ENST00000581077 86 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 NRBF2P1-201ENST00000587407 859 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AL356266.1-201ENST00000623311 483 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AC091953.2-201ENST00000623979 160 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AC243829.7-201ENST00000633081 225 ntBASIC2.71□□□□□ -1.98
CCDC43Q96MW1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC43Q96MW1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 RNU5E-6P-201ENST00000365574 115 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 USP9YP6-201ENST00000413550 854 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 OR51A5P-201ENST00000415429 942 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 MTCYBP39-201ENST00000437562 491 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 BRK1P2-201ENST00000442875 223 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AC092001.1-201ENST00000453012 261 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 SSXP1-201ENST00000453640 473 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 SNORA31.15-201ENST00000516771 132 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 RNA5SP402-201ENST00000517148 110 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AP001372.4-201ENST00000524889 472 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 MIR5571-201ENST00000577998 113 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AC008751.2-201ENST00000597885 980 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AL365204.3-201ENST00000612448 685 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AL512643.1-201ENST00000635735 524 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 MIR7157-201ENST00000635801 60 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 MTND5P42-201ENST00000637720 498 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 AL445523.1-201ENST00000451184 1362 ntBASIC2.7□□□□□ -1.98
CCDC43Q96MW1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC43Q96MW1 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 SNORA38-201ENST00000363946 132 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 Z98749.2-208ENST00000381646 500 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 MIR147B-201ENST00000390185 80 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 RNA5SP508-201ENST00000411327 119 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC007064.1-201ENST00000412238 351 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC006366.1-201ENST00000422002 759 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 RPL30P4-201ENST00000429309 333 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC004383.1-201ENST00000438135 289 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 HMGB3P12-201ENST00000438745 556 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC068587.2-201ENST00000478386 781 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 LINC00888-204ENST00000487386 421 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 RN7SL636P-201ENST00000497504 294 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 RNU6-1092P-201ENST00000516955 87 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC009902.1-201ENST00000519351 183 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC025755.1-201ENST00000521306 278 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC091489.2-201ENST00000566263 604 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC234772.3-201ENST00000602277 528 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC007938.3-201ENST00000604965 623 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 uc_338.14-201ENST00000613162 166 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.69□□□□□ -1.98
CCDC43Q96MW1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC43Q96MW1 U8.8-201ENST00000365399 135 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 SNORA4.3-201ENST00000365564 137 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms