Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNA5SP124-201ENST00000362739 110 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNY1P16-201ENST00000363063 111 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.151-201ENST00000363566 112 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU1-132P-201ENST00000364300 164 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-81P-201ENST00000365608 104 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-493P-201ENST00000391321 108 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL445305.1-201ENST00000432577 575 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC104073.1-201ENST00000451988 151 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL133244.1-201ENST00000456007 258 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU7-169P-201ENST00000459456 61 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR4293-201ENST00000584305 78 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 BDH2P1-201ENST00000602288 736 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL670379.6-201ENST00000603753 252 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC079587.1-201ENST00000603846 277 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL670379.1-201ENST00000604752 252 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL670379.5-201ENST00000605253 252 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL670379.8-201ENST00000605353 252 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL670379.7-201ENST00000605823 252 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 DLEU2_2.2-201ENST00000615474 90 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL021997.2-201ENST00000615674 271 ntBASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNA5SP72-201ENST00000364442 117 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-174P-201ENST00000410406 106 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU2-20P-201ENST00000410425 191 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC093106.2-201ENST00000428212 385 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ABCF2P2-201ENST00000450549 296 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPS23P5-201ENST00000495419 428 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC108145.1-201ENST00000503770 153 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC107393.1-201ENST00000512403 346 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP006587.4-201ENST00000526053 529 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPL23AP97-201ENST00000568955 471 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC009093.8-201ENST00000641769 292 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC125336.1-201ENST00000508893 2827 ntBASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC006484.1-201ENST00000435086 1884 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SNORD81.1-201ENST00000363064 77 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.170-201ENST00000363746 110 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.199-201ENST00000364014 102 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR3065-201ENST00000390137 79 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNA5SP111-201ENST00000411386 101 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPEP5-201ENST00000441137 268 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 PPIAP3-201ENST00000450588 505 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL136126.1-201ENST00000473603 402 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC008716.1-201ENST00000511084 513 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC074250.1-201ENST00000511117 192 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 DEFB108E-201ENST00000524692 240 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC126177.3-201ENST00000551839 688 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC113403.1-201ENST00000604910 193 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL137003.2-201ENST00000606924 2538 ntBASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.68□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU1-15P-201ENST00000353977 144 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR411-201ENST00000362239 96 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-1266P-201ENST00000362794 105 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU1-76P-201ENST00000362903 159 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-1284P-201ENST00000363701 100 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 230.1 ms