Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU2-47P-201ENST00000410649 186 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 GTF2IP7-202ENST00000436677 309 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC092393.1-201ENST00000439625 742 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 CALM1P1-201ENST00000442082 433 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 HSPA8P13-201ENST00000523715 472 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 MTCO1P40-201ENST00000574371 625 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 MIR3912-201ENST00000577566 105 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC091946.2-201ENST00000606105 291 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AL583856.2-201ENST00000606298 543 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC080013.4-201ENST00000607624 649 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 MIR6078-201ENST00000611069 100 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC107308.1-201ENST00000615897 301 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC091925.2-201ENST00000625059 256 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 AC103710.2-202ENST00000641454 2853 ntBASIC1.93□□□□□ -2.1
SHANK3Q9BYB0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 HSPE1P11-201ENST00000339579 310 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 DEFB108F-201ENST00000344638 222 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 Y_RNA.110-201ENST00000363220 99 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 RNU6-839P-201ENST00000363347 108 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 RNA5SP139-201ENST00000364340 117 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 RNU1-139P-201ENST00000391307 165 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 RNU2-28P-201ENST00000410457 189 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AC012497.1-201ENST00000429392 575 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 COX6CP14-201ENST00000469580 174 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 Y_RNA.681-201ENST00000516445 113 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 DEFB108D-201ENST00000527787 222 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 CYB5AP5-201ENST00000549779 389 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 FAM60BP-201ENST00000578364 658 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 COX6CP3-201ENST00000580869 223 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AC092474.3-201ENST00000603022 568 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AL031176.1-201ENST00000604554 466 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AP000238.1-201ENST00000608759 426 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AL512506.1-201ENST00000613918 449 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 AC008121.3-201ENST00000618726 433 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 U6.101-201ENST00000637707 76 ntBASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
SHANK3Q9BYB0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 RNU6-216P-201ENST00000363282 104 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 RNU6-516P-201ENST00000411381 104 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 RFC5P1-201ENST00000454419 874 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 PNPLA4P1-201ENST00000458328 305 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC104164.3-201ENST00000467363 1258 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 RBM43P1-201ENST00000476891 1081 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 RNU6-885P-201ENST00000516607 104 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 MTCO3P15-201ENST00000526563 574 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC004987.4-201ENST00000603383 338 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC068944.2-201ENST00000610373 403 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AL356585.4-201ENST00000623078 1229 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC006927.2-201ENST00000639256 389 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC011477.1-204ENST00000623416 1325 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 SNORD114-27-201ENST00000363766 70 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 SNORA14A-201ENST00000364773 135 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 HMGN2P38-201ENST00000423806 265 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 MTCYBP32-201ENST00000427945 1084 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 UBE2V1P6-201ENST00000430840 422 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AL096829.2-201ENST00000446582 742 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 Z82190.1-201ENST00000454534 490 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 SETP11-201ENST00000473027 690 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC008427.1-201ENST00000503102 655 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC010460.2-201ENST00000509054 677 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC019176.1-201ENST00000518519 225 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AP003355.1-201ENST00000518956 587 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC104417.1-201ENST00000523974 751 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC245036.5-201ENST00000596330 847 ntBASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.91□□□□□ -2.1
SHANK3Q9BYB0 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1300P-201ENST00000391046 108 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1197P-201ENST00000391183 107 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AL356057.2-201ENST00000403318 432 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 RPL7P27-201ENST00000403775 720 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 165.2 ms