Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Cdc40Q9DC48 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cdc40Q9DC48 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.4■■□□□ 1.02
Cdc40Q9DC48 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Cdc40Q9DC48 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cdc40Q9DC48 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.39■■□□□ 1.02
Cdc40Q9DC48 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Cdc40Q9DC48 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Cdc40Q9DC48 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.39■■□□□ 1.01
Cdc40Q9DC48 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cdc40Q9DC48 Gm6311-201ENSMUST00000073790 878 ntBASIC21.39■■□□□ 1.01
Cdc40Q9DC48 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cdc40Q9DC48 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Cdc40Q9DC48 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cdc40Q9DC48 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cdc40Q9DC48 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cdc40Q9DC48 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Cdc40Q9DC48 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cdc40Q9DC48 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdc40Q9DC48 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdc40Q9DC48 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdc40Q9DC48 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cdc40Q9DC48 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdc40Q9DC48 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cdc40Q9DC48 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cdc40Q9DC48 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdc40Q9DC48 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cdc40Q9DC48 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cdc40Q9DC48 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cdc40Q9DC48 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cdc40Q9DC48 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cdc40Q9DC48 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cdc40Q9DC48 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cdc40Q9DC48 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cdc40Q9DC48 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.33■■□□□ 1
Cdc40Q9DC48 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cdc40Q9DC48 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cdc40Q9DC48 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdc40Q9DC48 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Cdc40Q9DC48 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cdc40Q9DC48 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Cdc40Q9DC48 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cdc40Q9DC48 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cdc40Q9DC48 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.31■■□□□ 1
Cdc40Q9DC48 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cdc40Q9DC48 Gm11175-201ENSMUST00000116172 543 ntBASIC21.29■■□□□ 1
Cdc40Q9DC48 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Cdc40Q9DC48 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.28■■□□□ 1
Cdc40Q9DC48 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Cdc40Q9DC48 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdc40Q9DC48 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.28■■□□□ 1
Cdc40Q9DC48 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.27■■□□□ 1
Cdc40Q9DC48 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Cdc40Q9DC48 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdc40Q9DC48 Mir6538-201ENSMUST00000183713 110 ntBASIC21.27■■□□□ 1
Cdc40Q9DC48 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdc40Q9DC48 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdc40Q9DC48 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdc40Q9DC48 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdc40Q9DC48 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Cdc40Q9DC48 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdc40Q9DC48 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.25■□□□□ 0.99
Cdc40Q9DC48 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Cdc40Q9DC48 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Cdc40Q9DC48 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Cdc40Q9DC48 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdc40Q9DC48 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.23■□□□□ 0.99
Cdc40Q9DC48 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cdc40Q9DC48 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.22■□□□□ 0.99
Cdc40Q9DC48 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.22■□□□□ 0.99
Cdc40Q9DC48 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdc40Q9DC48 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.21■□□□□ 0.99
Cdc40Q9DC48 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.21■□□□□ 0.99
Cdc40Q9DC48 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.21■□□□□ 0.99
Cdc40Q9DC48 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdc40Q9DC48 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.2■□□□□ 0.98
Cdc40Q9DC48 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdc40Q9DC48 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Cdc40Q9DC48 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdc40Q9DC48 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdc40Q9DC48 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Cdc40Q9DC48 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdc40Q9DC48 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdc40Q9DC48 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdc40Q9DC48 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdc40Q9DC48 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cdc40Q9DC48 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdc40Q9DC48 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdc40Q9DC48 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms