Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Trim56Q80VI1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
Trim56Q80VI1 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trim56Q80VI1 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC27.73■■■□□ 2.03
Trim56Q80VI1 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Trim56Q80VI1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Trim56Q80VI1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Trim56Q80VI1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Trim56Q80VI1 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Trim56Q80VI1 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Trim56Q80VI1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.02
Trim56Q80VI1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC27.7■■■□□ 2.02
Trim56Q80VI1 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC27.69■■■□□ 2.02
Trim56Q80VI1 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC27.69■■■□□ 2.02
Trim56Q80VI1 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Trim56Q80VI1 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Trim56Q80VI1 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Trim56Q80VI1 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC27.68■■■□□ 2.02
Trim56Q80VI1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Trim56Q80VI1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC27.67■■■□□ 2.02
Trim56Q80VI1 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Trim56Q80VI1 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
Trim56Q80VI1 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
Trim56Q80VI1 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Trim56Q80VI1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
Trim56Q80VI1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC27.64■■■□□ 2.02
Trim56Q80VI1 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Trim56Q80VI1 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Trim56Q80VI1 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
Trim56Q80VI1 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
Trim56Q80VI1 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC27.63■■■□□ 2.01
Trim56Q80VI1 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Trim56Q80VI1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
Trim56Q80VI1 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC27.62■■■□□ 2.01
Trim56Q80VI1 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
Trim56Q80VI1 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Trim56Q80VI1 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC27.61■■■□□ 2.01
Trim56Q80VI1 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Trim56Q80VI1 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Trim56Q80VI1 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC27.59■■■□□ 2.01
Trim56Q80VI1 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Trim56Q80VI1 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC27.59■■■□□ 2.01
Trim56Q80VI1 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
Trim56Q80VI1 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC27.58■■■□□ 2.01
Trim56Q80VI1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
Trim56Q80VI1 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27.58■■■□□ 2.01
Trim56Q80VI1 Gm4799-201ENSMUST00000095396 657 ntBASIC27.58■■■□□ 2.01
Trim56Q80VI1 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC27.57■■■□□ 2
Trim56Q80VI1 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Trim56Q80VI1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
Trim56Q80VI1 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
Trim56Q80VI1 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC27.56■■■□□ 2
Trim56Q80VI1 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Trim56Q80VI1 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC27.55■■■□□ 2
Trim56Q80VI1 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Trim56Q80VI1 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC27.53■■■□□ 2
Trim56Q80VI1 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Trim56Q80VI1 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Trim56Q80VI1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Trim56Q80VI1 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC27.52■■■□□ 2
Trim56Q80VI1 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Trim56Q80VI1 Gm13889-201ENSMUST00000099689 1386 ntBASIC27.51■■□□□ 1.99
Trim56Q80VI1 Gm45364-201ENSMUST00000210883 159 ntBASIC27.51■■□□□ 1.99
Trim56Q80VI1 AC153890.1-201ENSMUST00000220021 2469 ntBASIC27.5■■□□□ 1.99
Trim56Q80VI1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Trim56Q80VI1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC27.5■■□□□ 1.99
Trim56Q80VI1 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC27.5■■□□□ 1.99
Trim56Q80VI1 Gm6311-201ENSMUST00000073790 878 ntBASIC27.5■■□□□ 1.99
Trim56Q80VI1 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Trim56Q80VI1 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Trim56Q80VI1 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Trim56Q80VI1 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Trim56Q80VI1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
Trim56Q80VI1 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC27.48■■□□□ 1.99
Trim56Q80VI1 Mir3960-201ENSMUST00000198213 73 ntBASIC27.48■■□□□ 1.99
Trim56Q80VI1 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Trim56Q80VI1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC27.47■■□□□ 1.99
Trim56Q80VI1 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
Trim56Q80VI1 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
Trim56Q80VI1 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Trim56Q80VI1 AC154454.1-201ENSMUST00000225253 216 ntBASIC27.46■■□□□ 1.99
Trim56Q80VI1 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC27.45■■□□□ 1.98
Trim56Q80VI1 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Trim56Q80VI1 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Trim56Q80VI1 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC27.45■■□□□ 1.98
Trim56Q80VI1 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC27.44■■□□□ 1.98
Trim56Q80VI1 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Trim56Q80VI1 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Trim56Q80VI1 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
Trim56Q80VI1 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Trim56Q80VI1 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Trim56Q80VI1 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Trim56Q80VI1 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Trim56Q80VI1 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC27.41■■□□□ 1.98
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms