Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.5■■□□□ 1.03
Pif1Q80SX8 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Pif1Q80SX8 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pif1Q80SX8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Pif1Q80SX8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pif1Q80SX8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
Pif1Q80SX8 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pif1Q80SX8 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Pif1Q80SX8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Pif1Q80SX8 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pif1Q80SX8 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pif1Q80SX8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pif1Q80SX8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Pif1Q80SX8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pif1Q80SX8 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pif1Q80SX8 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.47■■□□□ 1.03
Pif1Q80SX8 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pif1Q80SX8 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pif1Q80SX8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pif1Q80SX8 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pif1Q80SX8 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pif1Q80SX8 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pif1Q80SX8 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Pif1Q80SX8 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.44■■□□□ 1.02
Pif1Q80SX8 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.44■■□□□ 1.02
Pif1Q80SX8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Pif1Q80SX8 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pif1Q80SX8 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.42■■□□□ 1.02
Pif1Q80SX8 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Pif1Q80SX8 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pif1Q80SX8 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pif1Q80SX8 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pif1Q80SX8 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Pif1Q80SX8 Gm27502-201ENSMUST00000183495 199 ntBASIC21.41■■□□□ 1.02
Pif1Q80SX8 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pif1Q80SX8 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pif1Q80SX8 Gm7332-201ENSMUST00000118351 454 ntBASIC21.4■■□□□ 1.02
Pif1Q80SX8 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pif1Q80SX8 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Pif1Q80SX8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pif1Q80SX8 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pif1Q80SX8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pif1Q80SX8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.02
Pif1Q80SX8 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pif1Q80SX8 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pif1Q80SX8 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pif1Q80SX8 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pif1Q80SX8 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.01
Pif1Q80SX8 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pif1Q80SX8 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.38■■□□□ 1.01
Pif1Q80SX8 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pif1Q80SX8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pif1Q80SX8 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pif1Q80SX8 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
Pif1Q80SX8 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.37■■□□□ 1.01
Pif1Q80SX8 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pif1Q80SX8 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pif1Q80SX8 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.36■■□□□ 1.01
Pif1Q80SX8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pif1Q80SX8 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pif1Q80SX8 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pif1Q80SX8 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
Pif1Q80SX8 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.35■■□□□ 1.01
Pif1Q80SX8 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pif1Q80SX8 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.34■■□□□ 1.01
Pif1Q80SX8 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Pif1Q80SX8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pif1Q80SX8 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pif1Q80SX8 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pif1Q80SX8 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pif1Q80SX8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Pif1Q80SX8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Pif1Q80SX8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Pif1Q80SX8 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.32■■□□□ 1
Pif1Q80SX8 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Pif1Q80SX8 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pif1Q80SX8 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pif1Q80SX8 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.3■■□□□ 1
Pif1Q80SX8 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.3■■□□□ 1
Pif1Q80SX8 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Pif1Q80SX8 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pif1Q80SX8 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pif1Q80SX8 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pif1Q80SX8 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.29■■□□□ 1
Pif1Q80SX8 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Pif1Q80SX8 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Pif1Q80SX8 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.28■■□□□ 1
Pif1Q80SX8 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.28■■□□□ 1
Pif1Q80SX8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Pif1Q80SX8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC21.28■■□□□ 1
Pif1Q80SX8 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Pif1Q80SX8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Pif1Q80SX8 Gm9812-201ENSMUST00000061934 968 ntBASIC21.27■■□□□ 1
Pif1Q80SX8 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.27■■□□□ 1
Pif1Q80SX8 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pif1Q80SX8 Gm14523-201ENSMUST00000117260 558 ntBASIC21.26■□□□□ 0.99
Pif1Q80SX8 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pif1Q80SX8 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pif1Q80SX8 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pif1Q80SX8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms