Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.88■■□□□ 1.09
Rnf220Q6PDX6 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Rnf220Q6PDX6 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
Rnf220Q6PDX6 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Rnf220Q6PDX6 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Rnf220Q6PDX6 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Rnf220Q6PDX6 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rnf220Q6PDX6 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Rnf220Q6PDX6 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Rnf220Q6PDX6 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
Rnf220Q6PDX6 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rnf220Q6PDX6 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rnf220Q6PDX6 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Rnf220Q6PDX6 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
Rnf220Q6PDX6 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.84■■□□□ 1.09
Rnf220Q6PDX6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rnf220Q6PDX6 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rnf220Q6PDX6 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Rnf220Q6PDX6 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Rnf220Q6PDX6 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Rnf220Q6PDX6 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Rnf220Q6PDX6 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Rnf220Q6PDX6 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Rnf220Q6PDX6 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rnf220Q6PDX6 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rnf220Q6PDX6 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rnf220Q6PDX6 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Rnf220Q6PDX6 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rnf220Q6PDX6 Notumos-201ENSMUST00000151998 2659 ntBASIC21.8■■□□□ 1.08
Rnf220Q6PDX6 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rnf220Q6PDX6 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rnf220Q6PDX6 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rnf220Q6PDX6 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rnf220Q6PDX6 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rnf220Q6PDX6 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rnf220Q6PDX6 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rnf220Q6PDX6 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rnf220Q6PDX6 Gm16148-201ENSMUST00000119653 893 ntBASIC21.75■■□□□ 1.07
Rnf220Q6PDX6 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rnf220Q6PDX6 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Rnf220Q6PDX6 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Rnf220Q6PDX6 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.75■■□□□ 1.07
Rnf220Q6PDX6 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rnf220Q6PDX6 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rnf220Q6PDX6 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Rnf220Q6PDX6 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Rnf220Q6PDX6 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rnf220Q6PDX6 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rnf220Q6PDX6 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rnf220Q6PDX6 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rnf220Q6PDX6 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.71■■□□□ 1.07
Rnf220Q6PDX6 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
Rnf220Q6PDX6 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Rnf220Q6PDX6 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Rnf220Q6PDX6 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rnf220Q6PDX6 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rnf220Q6PDX6 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rnf220Q6PDX6 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rnf220Q6PDX6 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rnf220Q6PDX6 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rnf220Q6PDX6 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rnf220Q6PDX6 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms