Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Rtl3Q6P1Y1 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Rtl3Q6P1Y1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Rtl3Q6P1Y1 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Rtl3Q6P1Y1 Gm11175-201ENSMUST00000116172 543 ntBASIC24.01■■□□□ 1.43
Rtl3Q6P1Y1 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.01■■□□□ 1.43
Rtl3Q6P1Y1 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Rtl3Q6P1Y1 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Rtl3Q6P1Y1 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24■■□□□ 1.43
Rtl3Q6P1Y1 Mir6538-201ENSMUST00000183713 110 ntBASIC24■■□□□ 1.43
Rtl3Q6P1Y1 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24■■□□□ 1.43
Rtl3Q6P1Y1 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Rtl3Q6P1Y1 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Rtl3Q6P1Y1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Rtl3Q6P1Y1 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC23.99■■□□□ 1.43
Rtl3Q6P1Y1 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
Rtl3Q6P1Y1 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Rtl3Q6P1Y1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Rtl3Q6P1Y1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Rtl3Q6P1Y1 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
Rtl3Q6P1Y1 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
Rtl3Q6P1Y1 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Rtl3Q6P1Y1 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
Rtl3Q6P1Y1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Rtl3Q6P1Y1 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Rtl3Q6P1Y1 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Rtl3Q6P1Y1 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
Rtl3Q6P1Y1 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Rtl3Q6P1Y1 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
Rtl3Q6P1Y1 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Rtl3Q6P1Y1 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
Rtl3Q6P1Y1 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Rtl3Q6P1Y1 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.91■■□□□ 1.42
Rtl3Q6P1Y1 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Rtl3Q6P1Y1 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Rtl3Q6P1Y1 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Rtl3Q6P1Y1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Rtl3Q6P1Y1 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC23.89■■□□□ 1.41
Rtl3Q6P1Y1 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Rtl3Q6P1Y1 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rtl3Q6P1Y1 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rtl3Q6P1Y1 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Rtl3Q6P1Y1 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC23.87■■□□□ 1.41
Rtl3Q6P1Y1 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Rtl3Q6P1Y1 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Rtl3Q6P1Y1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC23.86■■□□□ 1.41
Rtl3Q6P1Y1 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Rtl3Q6P1Y1 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Rtl3Q6P1Y1 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Rtl3Q6P1Y1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Rtl3Q6P1Y1 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Rtl3Q6P1Y1 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Rtl3Q6P1Y1 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
Rtl3Q6P1Y1 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Rtl3Q6P1Y1 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC23.84■■□□□ 1.41
Rtl3Q6P1Y1 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC23.84■■□□□ 1.41
Rtl3Q6P1Y1 Gm4799-201ENSMUST00000095396 657 ntBASIC23.84■■□□□ 1.41
Rtl3Q6P1Y1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Rtl3Q6P1Y1 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Rtl3Q6P1Y1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Rtl3Q6P1Y1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC23.82■■□□□ 1.4
Rtl3Q6P1Y1 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rtl3Q6P1Y1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
Rtl3Q6P1Y1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Rtl3Q6P1Y1 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rtl3Q6P1Y1 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rtl3Q6P1Y1 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Rtl3Q6P1Y1 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Rtl3Q6P1Y1 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Rtl3Q6P1Y1 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
Rtl3Q6P1Y1 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Rtl3Q6P1Y1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC23.8■■□□□ 1.4
Rtl3Q6P1Y1 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Rtl3Q6P1Y1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Rtl3Q6P1Y1 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Rtl3Q6P1Y1 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Rtl3Q6P1Y1 Gm6311-201ENSMUST00000073790 878 ntBASIC23.79■■□□□ 1.4
Rtl3Q6P1Y1 Cap2-205ENSMUST00000225824 1634 ntBASIC23.78■■□□□ 1.4
Rtl3Q6P1Y1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Rtl3Q6P1Y1 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC23.77■■□□□ 1.4
Rtl3Q6P1Y1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
Rtl3Q6P1Y1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Rtl3Q6P1Y1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Rtl3Q6P1Y1 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Rtl3Q6P1Y1 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Rtl3Q6P1Y1 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Rtl3Q6P1Y1 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Rtl3Q6P1Y1 Mir3960-201ENSMUST00000198213 73 ntBASIC23.74■■□□□ 1.39
Rtl3Q6P1Y1 AC154454.1-201ENSMUST00000225253 216 ntBASIC23.74■■□□□ 1.39
Rtl3Q6P1Y1 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Rtl3Q6P1Y1 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC23.74■■□□□ 1.39
Rtl3Q6P1Y1 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Rtl3Q6P1Y1 Gm13889-201ENSMUST00000099689 1386 ntBASIC23.74■■□□□ 1.39
Rtl3Q6P1Y1 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rtl3Q6P1Y1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC23.73■■□□□ 1.39
Rtl3Q6P1Y1 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC23.72■■□□□ 1.39
Rtl3Q6P1Y1 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Rtl3Q6P1Y1 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.71■■□□□ 1.39
Rtl3Q6P1Y1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC23.71■■□□□ 1.39
Rtl3Q6P1Y1 Gm45364-201ENSMUST00000210883 159 ntBASIC23.71■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms