Protein–RNA interactions for Protein: Q5R1I1

Trav7d-3, T cell receptor alpha variable 7-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-3Q5R1I1 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC16.95■□□□□ 0.3
Trav7d-3Q5R1I1 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav7d-3Q5R1I1 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC16.95■□□□□ 0.3
Trav7d-3Q5R1I1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 Gm30023-201ENSMUST00000197970 889 ntBASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav7d-3Q5R1I1 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav7d-3Q5R1I1 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav7d-3Q5R1I1 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav7d-3Q5R1I1 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav7d-3Q5R1I1 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Trav7d-3Q5R1I1 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav7d-3Q5R1I1 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav7d-3Q5R1I1 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC16.89■□□□□ 0.29
Trav7d-3Q5R1I1 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trav7d-3Q5R1I1 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav7d-3Q5R1I1 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav7d-3Q5R1I1 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trav7d-3Q5R1I1 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trav7d-3Q5R1I1 Particl-201ENSMUST00000205370 1560 ntBASIC16.87■□□□□ 0.29
Trav7d-3Q5R1I1 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trav7d-3Q5R1I1 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav7d-3Q5R1I1 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav7d-3Q5R1I1 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trav7d-3Q5R1I1 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC16.86■□□□□ 0.29
Trav7d-3Q5R1I1 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Trav7d-3Q5R1I1 Gm37847-201ENSMUST00000192163 1497 ntBASIC16.86■□□□□ 0.29
Trav7d-3Q5R1I1 Gm31748-201ENSMUST00000194938 1497 ntBASIC16.86■□□□□ 0.29
Trav7d-3Q5R1I1 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trav7d-3Q5R1I1 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav7d-3Q5R1I1 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav7d-3Q5R1I1 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trav7d-3Q5R1I1 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trav7d-3Q5R1I1 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trav7d-3Q5R1I1 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trav7d-3Q5R1I1 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trav7d-3Q5R1I1 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Trav7d-3Q5R1I1 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trav7d-3Q5R1I1 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC16.83■□□□□ 0.28
Trav7d-3Q5R1I1 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Trav7d-3Q5R1I1 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trav7d-3Q5R1I1 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trav7d-3Q5R1I1 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trav7d-3Q5R1I1 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
Trav7d-3Q5R1I1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav7d-3Q5R1I1 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Trav7d-3Q5R1I1 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trav7d-3Q5R1I1 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav7d-3Q5R1I1 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav7d-3Q5R1I1 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Trav7d-3Q5R1I1 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trav7d-3Q5R1I1 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trav7d-3Q5R1I1 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav7d-3Q5R1I1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trav7d-3Q5R1I1 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav7d-3Q5R1I1 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav7d-3Q5R1I1 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav7d-3Q5R1I1 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav7d-3Q5R1I1 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trav7d-3Q5R1I1 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav7d-3Q5R1I1 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Trav7d-3Q5R1I1 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trav7d-3Q5R1I1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
Trav7d-3Q5R1I1 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trav7d-3Q5R1I1 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav7d-3Q5R1I1 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav7d-3Q5R1I1 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC16.77■□□□□ 0.28
Trav7d-3Q5R1I1 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav7d-3Q5R1I1 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trav7d-3Q5R1I1 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trav7d-3Q5R1I1 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav7d-3Q5R1I1 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav7d-3Q5R1I1 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav7d-3Q5R1I1 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms